Open amirhusseinab opened 8 months ago
The .surf.gii
files here are the subject native surfaces. You will need to use fsLR surfaces with .dtseries.nii
.
Thanks for the reply. The only .surf.gii files with fsLR in the analyzed /anat folder are sub-##_ses-001_hemi-L/R_space-fsLR_desc-reg_sphere.surf.gii, sub-##_ses-001_hemi-L/R_space-fsLR_desc-msmsulc_sphere.surf.gii
There are no midthickness/pial/white surf.gii files in "fsLR". Even though loading fsLR.dtseries.nii on the above-mentioned sphere surfaces also results in the same previous error. Of note, fmriprep's log file has no errors.
I am having the same issue, could you find a fix @amirhusseinab?
I dropped it that time as it was not a priority, but will be glad to hear any solutions. I have not also tried with the latest versions of fmriprep (24.0.0) and xcp-d.
What happened?
Hi,
After running the CIFTI pipeline with --project-goodvoxels, I tried to load the sub-###_ses-###_task-rest_space-fsLR_den-91k_bold.dtseries.nii on Left and right midthickness surface files inside Workbench View. I got this error:
The CIFTI file contains 32492 nodes for structure CortexLeft but the corresponding surface brain structure contains 232669 nodes.
It seems the surfaces are not in 91k resolution.
Also, an additional question: Does that "den" indicate denoised? So, there is no need for further denoising (e.g., with XCP-D)?
What command did you use?
What version of fMRIPrep are you running?
23.2.0a3
How are you running fMRIPrep?
Singularity
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
No response
Additional information / screenshots
No response