Closed hfxcarl closed 2 months ago
This was fixed in https://github.com/nipreps/smriprep/issues/416, hoping to get a new release out with the fix this week.
BTW, I believe the MNIPediatricAsym:res-2:cohort-5
in your command should be MNIPediatricAsym:cohort-5:res-2
, as cohort is parsed before resolution.
We should probably not be sensitive to the order of the modifiers.
Hi all @effigies @mgxd
I have the same issue ValueError: ‘MNIPediatricAsym:cohort-1’ is not in list
in fmriprep 23.2.1.
And this is the argument --output-spaces MNIPediatricAsym:res-1:cohort-1
used in my script.
Has this issue been solved or can I use other versions released before fmriprep 23.2.1.
Best, Yunhong
@WangYunHong98 sorry for the delay - this is fixed in 24.0.0
@mgxd It's fine. Thank you for the excellent work you do for fmriprep!
What happened?
Running latest 23.2.0 fmriprep on QTAB OpenNeuro dataset and specifying --output-spaces MNIPediatric:cohort-5:res-2.
What command did you use?
What version of fMRIPrep are you running?
23.2.0
How are you running fMRIPrep?
Singularity
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Additional information / screenshots
I think there might be a naming issue including "cohort-5" twice? (_in_tuple_MNIPediatricAsymcohort-5.cohort5.res2):
Specific line from above log: 240301-21:04:27,259 nipype.workflow INFO: [Node] Setting-up "fmriprep_23_2_wf.sub_0005_wf.template_iterator_wf.select_xfm" in "/work/fmriprep_23_2_wf/sub_0005_wf/template_iterator_wf/_in_tuple_MNIPediatricAsymcohort-5.cohort5.res2/select_xfm".