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nipreps / fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
https://fmriprep.org
Apache License 2.0
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Save white, pial, inflated and midthickness surface gifti files #394

Closed chrisgorgo closed 7 years ago

chrisgorgo commented 7 years ago

Make sure they overlap with the _preproc volume when loaded in Freeview and Connectome Workbench. Use .R.surf.gii suffix/extension.

chrisgorgo commented 7 years ago

If the volumes do not overlap we might need to output the conformed FS T1 as the T1w_preproc (and adjust FAST to use it instead of the original T1).

effigies commented 7 years ago

For the white-matter boundary, do we want white or smoothwm? It's a pretty minor difference, so I'm okay with going either way.

chrisgorgo commented 7 years ago

I'm not sure what's the difference, so I'll leave it up to you. We can always change it if someone complains.

On Mar 20, 2017 7:54 AM, "Chris Markiewicz" notifications@github.com wrote:

For the white-matter boundary, do we want white or smoothwm? It's a pretty minor difference, so I'm okay with going either way.

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