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nipreps / fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
https://fmriprep.org
Apache License 2.0
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Save BOLD derived brain mask in surface space #395

Open chrisgorgo opened 7 years ago

chrisgorgo commented 7 years ago

Use nearest neighbours interpolation and gifti file format. This should be available for the fsnative and fsaverage.

effigies commented 7 years ago

So looked at this again. To be clear, you're suggesting a surface where a vertex is 1 if it's in the bold_space-t1w_brainmask.nii.gz, and 0 if not? I guess these ought to be label.giis?

chrisgorgo commented 7 years ago

1) Yes 2) possibly I'm not sure what is the standard way of doing this in gifti land.

On Apr 18, 2017 7:18 AM, "Chris Markiewicz" notifications@github.com wrote:

So looked at this again. To be clear, you're suggesting a surface where a vertex is 1 if it's in the bold_space-t1w_brainmask.nii.gz, and 0 if not? I guess these ought to be label.giis?

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oesteban commented 6 years ago

In the lights of the derivatives survey and after more than a year open, is this still something to be implemented?

oesteban commented 6 years ago

I'm closing this one for now. @chrisfilo please reopen if this is still needed.

chrisgorgo commented 6 years ago

By closing this issue you might give an impression that you do not want such functionality in the package. Why not having such feature requests open, but tagged with low priority or help needed?

oesteban commented 6 years ago

Yes, no problem, I was just trying to clean up a bit.