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nipreps / fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
https://fmriprep.org
Apache License 2.0
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Integrate OASIS template to download system #47

Closed oesteban closed 8 years ago

craigmoodie commented 8 years ago

Hi Oscar,

I mentioned to Ross that you guys should probably include all of the ANTs templates and explain to the user that they will need to test which template works best for their dataset. To that end, we should probably find or make a little guide for what differentiates the templates and which features of the data will determine which template to try first. I think @chrisfilo knows a bit more about that than I do.

chrisgorgo commented 8 years ago

I have not heard about a dataset that fails with OASIS, but works with another template. It's potentially possible, but let's add this option and write documentation when we come across such case.

On Wed, May 25, 2016 at 2:06 PM, craigmoodie notifications@github.com wrote:

Reopened #47 https://github.com/poldracklab/preprocessing-workflow/issues/47.

— You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub https://github.com/poldracklab/preprocessing-workflow/issues/47#event-672377273

craigmoodie commented 8 years ago

I was under the impression that Courtney had optimal results with a different template, but looking back at that email chain we were on, I'm not sure if she tried and failed using the Oasis template.

chrisgorgo commented 8 years ago

I've heard about a case that fails with oasis template, but it also failed with other templates. If indeed some selection of a template is required we should aim at detecting skull stripping failure automatically and iterating over a list of templates until we find one that works. Let's defer this until we run into this problem, though.

On Wed, May 25, 2016 at 2:21 PM, craigmoodie notifications@github.com wrote:

I was under the impression that Courtney had optimal results with a different template, but looking back at that email chain we were on, I'm not sure if she tried and failed using the Oasis template.

— You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub https://github.com/poldracklab/preprocessing-workflow/issues/47#issuecomment-221711324

craigmoodie commented 8 years ago

Sounds good.