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nipreps / mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
http://mriqc.readthedocs.io
Apache License 2.0
299 stars 132 forks source link

FSL-less version #1032

Closed araikes closed 1 year ago

araikes commented 2 years ago

HI @oesteban,

I love MRIQC but have a particular application for which an FSL-less version (or at least a version that gives an "no FSL" running option) would be invaluable. I know there had been some effort to move in that direction at one point and I'm just curious what the status might be.

Thanks

oesteban commented 2 years ago

The plan is clear, and the tooling around MRIQC seems going in the right direction (e.g., the recent addition of SynthStrip for brain extraction).

Are you most interested on anatomical images, BOLD, or both anatomical and functional?

araikes commented 2 years ago

Ideally, we're looking for the ability to run both pipelines, however anatomical would be the priority.