nipreps / mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
http://mriqc.readthedocs.io
Apache License 2.0
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Framewise displacement visualization in group bold report cuts off outliers #1134

Open askieslinger opened 1 year ago

askieslinger commented 1 year ago

What happened?

When looking at the group bold report for a very large dataset (consisting of high/low motion groups), I noticed that the FD timepoints visualization only shows the middle of the box plot and all points above are clustered at the max of the plot. This seems misleading. See the FD #timepoints in this example. When hovering above the max cluster, there are many scans that have values of 4 or more for this metric, but this is not shown correctly or flagged. image

What command did you use?

datalad containers-run --container-name code/containers/bids-mriqc --input . --output derivatives/mriqc --message 'Create group level quality reports' --explicit '<path> <path> group --nprocs 16 --mem 31 --float32 --work-dir /tmp/ --verbose-reports --no-sub --modalities T1w T2w bold --fd_thres 1.7'

What version of the software are you running?

23.1.0

How are you running this software?

Singularity

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

No response

Additional information / screenshots

image