arokem
commented
6 months ago What's the point of the FA file? Where is it used subsequent to saving?
Closed oesteban closed 6 months ago
arokem
commented
6 months ago What's the point of the FA file? Where is it used subsequent to saving?
oesteban
commented
6 months ago Generating the reports, mostly.
On Fri, Mar 22, 2024, 21:07 Ariel Rokem @.***> wrote:
What's the point of the FA file? Where is it used subsequent to saving?
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What happened?
We are immediately cleaning up the FA: https://github.com/nipreps/mriqc/blob/61b59e01777fccd381fee9ac4ffc28a7b65c2f5c/mriqc/interfaces/diffusion.py#L472-L473 and that precludes that we calculate the percentage of degenerate tensors as an IQM or plot them highlighted for visual QA/QC.
Methods that require a "massaged" FA (e.g., to calculate the CC mask) should take these two easy steps on their own.
/cc @arokem @teresamg
What command did you use?
What version of the software are you running?
master
How are you running this software?
Local installation ("bare-metal")
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
No response
Additional information / screenshots
No response