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nipreps / mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
http://mriqc.readthedocs.io
Apache License 2.0
300 stars 132 forks source link

Multi-shell DTI report showing same SNR for best and worst volumes #1358

Open HQHuang opened 2 months ago

HQHuang commented 2 months ago

What happened?

We ran MRIQC in docker to get a report on multi-shell diffusion data (1 scan of b=0, 64 scans of b=1500 and 64 scans of b=3000). For shell1 (b=1500), we got same snr values for best and worst volumes. However, for shell2 (b=3000), we got a high snr for best volume and low snr for worst volume. See the screenshot below.

image

What command did you use?

docker run -it --rm -v $mriqc_in_dir:/data:ro -v $mriqc_out_dir:/out nipreps/mriqc:latest /data /out participant --participant_label ${mriqc_group} --n_procs 6 --no-sub

What version of the software are you running?

24.1.0.dev0+g3fe90466.d20240417

How are you running this software?

Docker

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

No response

Additional information / screenshots

No response