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nipreps / mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
http://mriqc.readthedocs.io
Apache License 2.0
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Running ICA only in some images #676

Closed mainux closed 6 years ago

mainux commented 6 years ago

Hi! I'd like to know if it is possible to run ICA only in some functional images, instead of in all the functional images that contains the BIDS directory. We have several AP and PA acquisitions with only 6 images, and they are generating a lot of errors because MRIQC is trying to compute ICA on them.

Thank you for your help!

oesteban commented 6 years ago

Hi @mainux, sorry for the delay.

Right now there is no way to do that explicitly. Indirectly, you can use the --session-id, --task-id, --run-id selectors to run with and without --ica correspondingly.

mainux commented 6 years ago

Ok, thanks!

I'll try

Maite Termenon Postdoctoral Researcher at BCBL Neurobiology of language group www.bcbl.eu

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From: "Oscar Esteban" notifications@github.com To: "poldracklab/mriqc" mriqc@noreply.github.com Cc: "mainux" m.termenon@bcbl.eu, "Mention" mention@noreply.github.com Sent: Monday, March 12, 2018 10:05:21 PM Subject: Re: [poldracklab/mriqc] Running ICA only in some images (#676)

Hi @mainux , sorry for the delay.

Right now there is no way to do that explicitly. Indirectly, you can use the --session-id , --task-id , --run-id selectors to run with and without --ica correspondingly.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub , or mute the thread .

stale[bot] commented 6 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

oesteban commented 6 years ago

Hi @mainux, we release version 0.12.1 fixing problems with BIDS filters (--task-id, --run-id, etc.).

Please reopen if you experience this issue again.