search

nipreps / mriqcwebapi-schemas

Schemas for the MRIQC WebAPI
Apache License 2.0
1 stars 0 forks source link

QC metrics failed to upload. Status 422 [...] "spikes_num": "unknown field" #1

Open psadil opened 10 months ago

psadil commented 10 months ago

What happened?

It looks like the IQMs are not submitted to MRIQC's metrics repository when the --fft-spikes-detector is turned on, and that this is due to a mismatched schema.

(Sorry if this is not the right repo for this issue.)

What command did you use?

singularity run --bind $PWD docker://nipreps/mriqc:23.1.0 -w $PWD/work --notrack --fd_thres 0.3  --nprocs 2 --mem 16000 rawdata derivatives participant

What version of the software are you running?

23.1.0

How are you running this software?

Singularity

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

INFO:    Using cached SIF image
240111-18:31:30,462 cli IMPORTANT:

    Running MRIQC version 23.1.0:
      * BIDS dataset path: /fastscratch/myscratch/pssadil/mriqc/rawdata.
      * Output folder: /fastscratch/myscratch/pssadil/mriqc/derivatives3.
      * Analysis levels: ['participant'].

240111-18:31:41,346 cli WARNING:
     IMPORTANT: Anonymized quality metrics (IQMs) will be submitted to MRIQC's metrics repository. Submission of IQMs can be disabled using the ``--no-sub`` argument. Please visit https://mriqc.readthedocs.io/en/latest/dsa.html to revise MRIQC's Data Sharing Agreement.
240111-18:32:11,719 nipype.interface WARNING:
     QC metrics upload failed to create an ID for the record uplOADED. rEsponse from server follows: {"_status": "ERR", "_issues": {"spikes_num": "unknown field"}, "_error": {"code": 422, "message": "Insertion failure: 1 document(s) contain(s) error(s)"}}
240111-18:32:11,720 nipype.interface WARNING:
     QC metrics failed to upload. Status 422: {"_status": "ERR", "_issues": {"spikes_num": "unknown field"}, "_error": {"code": 422, "message": "Insertion failure: 1 document(s) contain(s) error(s)"}}
240111-18:32:15,531 cli WARNING:
     IMPORTANT: Anonymized quality metrics (IQMs) will be submitted to MRIQC's metrics repository. Submission of IQMs can be disabled using the ``--no-sub`` argument. Please visit https://mriqc.readthedocs.io/en/latest/dsa.html to revise MRIQC's Data Sharing Agreement.
240111-18:32:15,912 cli IMPORTANT:
     Participant level finished successfully.

Additional information / screenshots

No response

oesteban commented 7 months ago

Thanks for noticing this!