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nipreps / nibabies

fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI
https://nibabies.readthedocs.io/en/latest
Apache License 2.0
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Choose Head Size Based off of age of Participant #198

Open audreymhoughton opened 2 years ago

audreymhoughton commented 2 years ago

A short summary of what you would like to see in NiBabies.

Scale brain size flag based off of the age of the participant. Will need to find or make a table for the best brain size for each age.

Do you have any interest in helping implement the feature?

Yes, but I would need guidance

Add any additional information or context about the request here.

I think we should be able to help find / make a table. We should have a resource we can use through the BCP data. I don't have the bandwidth to help add into the code itself though.

tsalo commented 9 months ago

What about calculating the head size from the anatomical image, as we do in XCP-D?

mgxd commented 9 months ago

@tsalo are you referring to this function? Looks interesting and reasonable to add

tsalo commented 9 months ago

Absolutely! There are probably better ways to do it than assuming the brain is a sphere, but that function seems to work fairly well (not that I've done rigorous testing).