Closed effigies closed 3 years ago
Checklist of wb_command
s that need to be Nipype-ized.
cifti-create-dense-from-template
cifti-create-dense-timeseries
cifti-dilate
cifti-create-label
cifti-resample
cifti-separate
cifti-smoothing
~volume-resample
volume-affine-resample
volume-all-labels-to-rois
volume-label-export-table
volume-label-import
Going to start on volume-resample.
I did not quite finish volume-resample. I'm not sure why they didn't just use flirt's apply transform, tbh.
The only missing interface is for -cifti-separate
, which has already been converted in https://github.com/nipy/nipype/pull/3306.
@mgxd Want to copy that one in here for now, so we don't need to wait on the review/release process in nipype?
Yeah, that sounds like the fastest way forward
To have a persistent link, here's the current script from DCAN: SubcorticalAlign_ROIs.sh
Note that this supersedes an older script: SubcorticalAlign_MNI_Affine.sh