nipreps / nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"
https://nireports.readthedocs.io
Apache License 2.0
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Plot physiological signals on top of the carpet plot #120

Open oesteban opened 2 months ago

oesteban commented 2 months ago

Modify the reportlet (https://github.com/nipreps/nireports/blob/main/nireports/reportlets/modality/func.py) so that physiological signals are also "pluggable". This implies:

m-miedema commented 2 months ago

I think it makes more sense to add a physio property rather than treating physio as a confound - this gives more flexibility for instituting the extra steps we need (searching for physio, allowing different meta-data, calculating different derivatives).

m-miedema commented 2 months ago

Some thoughts I hope will be helpful for any MRIQC shifts to plotting raw/minimally preprocessed physio signals on top of the carpet plot: