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nipreps
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nirodents
Apache License 2.0
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fix: typo in setup.cfg
#65
eilidhmacnicol
closed
2 months ago
1
problems with Nirodents installation in Docker - Apple Silicon
#64
Pomierny
closed
2 months ago
3
MouseIn template issue
#63
AnriiGegliuk
opened
5 months ago
1
problem with 3d mouse brain extraction
#62
esther1262
closed
1 year ago
4
Move deployment to GH actions
#61
oesteban
opened
1 year ago
0
MAINT: Replace versioneer with setuptools-scm & adapt packaging to PEP517
#60
oesteban
closed
1 year ago
0
MAINT: Flexibilize dependency pinnings
#59
oesteban
closed
1 year ago
1
MAINT: Rotate CircleCI secrets and setup up org-level context
#58
oesteban
closed
1 year ago
0
main: update docker
#57
eilidhmacnicol
closed
2 years ago
0
CI: docker deployment
#56
eilidhmacnicol
closed
2 years ago
6
pin: bump niworkflows to 1.5.x
#55
eilidhmacnicol
closed
2 years ago
0
fix/n4
#54
eilidhmacnicol
closed
2 years ago
0
FIX: input image absolute path
#53
eilidhmacnicol
closed
2 years ago
1
FIX: final n4 on clipped image
#52
eilidhmacnicol
closed
2 years ago
0
FIX: update brain extraction notebook
#51
eilidhmacnicol
closed
2 years ago
0
running nirodents on ubuntu
#50
eriktaylor
opened
2 years ago
2
FIX: reorder pre-brainextraction massaging
#49
eilidhmacnicol
closed
2 years ago
0
PIN: niworkflows 1.4.x
#48
eilidhmacnicol
closed
2 years ago
0
DOC: update changes.rst
#47
eilidhmacnicol
closed
2 years ago
1
specify input_image requires absolute path
#46
grandjeanlab
closed
2 years ago
0
ENH: improved clip function
#45
eilidhmacnicol
closed
3 years ago
3
ENH: improved brain extraction parameters
#44
eilidhmacnicol
closed
3 years ago
4
Masking mouse brains
#43
araikes
opened
3 years ago
14
FIX: cli updated so antsai no longer default
#42
eilidhmacnicol
closed
3 years ago
2
Enh/improve aniso bspline
#41
eilidhmacnicol
closed
3 years ago
3
ENH: scale Laplacian smoothing with voxel size
#40
eilidhmacnicol
closed
3 years ago
2
unused gaussian_filter function?
#39
eilidhmacnicol
opened
3 years ago
0
ENH: Continue refactoring the workflow
#38
oesteban
closed
4 years ago
4
REL: Preparing a 1.0 release
#37
oesteban
closed
4 years ago
1
ENH: adapt antsai paramaters from cli
#36
eilidhmacnicol
closed
4 years ago
4
ENH: Deep revision of the workflow
#35
oesteban
closed
4 years ago
9
ENH: Add RATS (commented out) and PCNN to dockerfile
#34
oesteban
closed
4 years ago
2
ENH: Second refactor of workflow - make ``antsAI`` optional
#33
oesteban
closed
4 years ago
1
ENH: Add an entrypoint in container images
#32
oesteban
closed
4 years ago
1
ENH: Several improvements over the overhaul
#31
oesteban
closed
4 years ago
2
ENH: Workflow overhaul
#30
oesteban
closed
4 years ago
3
FIX: update wf
#29
eilidhmacnicol
closed
4 years ago
3
rodent_brain_extraction_wf is not a directed acyclic graph (DAG)
#28
oesteban
closed
4 years ago
1
MAINT: Run black on the full repo, address pep8 errors
#27
oesteban
closed
4 years ago
3
ENH: Setup a smoke test on CircleCI + minor improvements to CLI
#26
oesteban
closed
4 years ago
1
FIX: Correctly pin niworkflows branch and use new interface
#25
oesteban
closed
4 years ago
1
Wrong mask being called from template flow
#24
eilidhmacnicol
closed
4 years ago
1
MAIN: tidy workflow
#23
eilidhmacnicol
closed
4 years ago
2
FIX: resampling bug
#22
eilidhmacnicol
closed
4 years ago
2
ResampleImageBySpacing unintended outputs
#21
eilidhmacnicol
closed
4 years ago
0
MAINT: Update version pinning of nipype and niworkflows to dev versions
#20
oesteban
closed
4 years ago
1
ENH: Add AFNI to docker image
#19
oesteban
closed
4 years ago
1
FIX: Data init file
#18
eilidhmacnicol
closed
4 years ago
2
FIX: Set correct binary path for ANTS
#17
oesteban
closed
4 years ago
1
ENH: add mosaic plots and wrapper
#16
eilidhmacnicol
closed
4 years ago
6
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