nipreps / niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)
https://www.nipreps.org/niworkflows
Apache License 2.0
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ENH: add PET support to niworkflows #823

Closed mnoergaard closed 1 year ago

mnoergaard commented 1 year ago

This PR adds PET support to the BIDS grabber in niworkflows, and addresses issue https://github.com/nipreps/niworkflows/issues/822#issue-1869149672 and mentioned here https://github.com/openneuropet/petdeface/pull/13

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (87e57b4) 63.07% compared to head (f688726) 63.08%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #823 +/- ## ======================================= Coverage 63.07% 63.08% ======================================= Files 53 53 Lines 6251 6252 +1 Branches 913 913 ======================================= + Hits 3943 3944 +1 Misses 2121 2121 Partials 187 187 ``` | [Flag](https://app.codecov.io/gh/nipreps/niworkflows/pull/823/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=nipreps) | Coverage Δ | | |---|---|---| | [reportlettests](https://app.codecov.io/gh/nipreps/niworkflows/pull/823/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=nipreps) | `∅ <ø> (∅)` | | | [unittests](https://app.codecov.io/gh/nipreps/niworkflows/pull/823/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=nipreps) | `∅ <ø> (∅)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=nipreps#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files Changed](https://app.codecov.io/gh/nipreps/niworkflows/pull/823?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=nipreps) | Coverage Δ | | |---|---|---| | [niworkflows/utils/bids.py](https://app.codecov.io/gh/nipreps/niworkflows/pull/823?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=nipreps#diff-bml3b3JrZmxvd3MvdXRpbHMvYmlkcy5weQ==) | `76.19% <ø> (ø)` | | | [niworkflows/interfaces/bids.py](https://app.codecov.io/gh/nipreps/niworkflows/pull/823?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=nipreps#diff-bml3b3JrZmxvd3MvaW50ZXJmYWNlcy9iaWRzLnB5) | `87.39% <100.00%> (+0.03%)` | :arrow_up: |

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