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nipreps / niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)
https://www.nipreps.org/niworkflows
Apache License 2.0
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FIX: Remove accidental MRIQC dependency, allow app config to be passed to workflow plugin #876

Closed effigies closed 3 weeks ago

effigies commented 3 weeks ago

Reverted some uses of config to the nipype config, which an app should generally be injecting into the nipype workflow config.

Some parts don't exist, so I'm allowing an app config to be passed as a plugin argument "app_config", and falling back to nipype defaults or trivial replacements.

Closes #875.