FIX: Mask fieldmap before fitting spline field [backport gh-396]

nipreps / sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

https://www.nipreps.org/sdcflows

Apache License 2.0

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FIX: Mask fieldmap before fitting spline field [backport gh-396] #398

Closed effigies closed 1 year ago

effigies commented 1 year ago

Straightforward backport. Would still be good to get a test. To anybody willing:

$ git clone https://github.com/effigies/sdcflows.git
$ git -C sdcflows checkout bp/2.5.x/396
$ pipx run "fmriprep-docker==23.1.4" [usual arguments] --patch sdcflows=$PWD/sdcflows/sdcflows

Backport of #396.

effigies commented 1 year ago

@oesteban WDYT about this backport? Are you comfortable doing this in a bug-fix release? I'm considering dropping it in and making a final bug-fix release of 23.1.x so the fix can be available for people before 23.2 is finalized