search

nipreps / smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
https://nipreps.github.io/smriprep
Apache License 2.0
132 stars 39 forks source link

Myelin maps (T1w/T2w) #432

Open effigies opened 4 months ago

effigies commented 4 months ago

Some users are interested in myelin maps. This should not be difficult. A good idea would be to study the HCP implementation and see what exactly they're doing to keep outputs comparable.

https://github.com/Washington-University/HCPpipelines/blob/3145a16e288881aab9b0ec57aea596265d86e18c/PostFreeSurfer/scripts/CreateMyelinMaps.sh#L132-L172

effigies commented 4 months ago

cc @ericfeczko If there are any issues DCAN have run into that we should be aware of.

tsalo commented 1 month ago

I vaguely recall there being a pseudo-transmit field bias correction described in Glasser et al. (2022) that isn't in the HCPpipelines repo yet.