Need a fall-back for cases where no T1w images are available

nipy / dmriprep

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Need a fall-back for cases where no T1w images are available #20

Open arokem opened 5 years ago

arokem commented 5 years ago

Two kinds of use-cases:

Acquisition protocols that don't include T1w.
Individual cases within a protocol that don't have that data (e.g., when the quality of the T1 is not good. This is a thing in the HBN dataset).

One option is to register to the FS average brain.

jyeatman commented 5 years ago

One option would be to copy in an mni template or fsaverage brain if there is not T1 image. This will put the data in (roughly) the correct orientation

arokem commented 5 years ago

DIPY has a function to fetch MNI template brains: dipy.data.fetch_mni_template