BIDS app - ify - Githubissues

nipy / dmriprep

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BIDS app - ify #9

Closed arokem closed 5 years ago

arokem commented 5 years ago

This should look just like other BIDS apps. Use the example app as a template.

richford commented 5 years ago

List of potential commands:

dmriprep run the BIDS app
dmriprep-data (non BIDS-app compliant command) takes in source, spits out local dir with downloaded files
dmriprep-test run dmriprep with/without PA/AP filenames, with niter=1 for eddy correction

richford commented 5 years ago

Need two separate docker workflows (possibly necessetating two difference Dockerfiles). One for BIDS app only, the other for development. BIDS version should have dmriprep entrypoint. Dev version should include ipython and have bash entrypoint.