Reading Phase Encoding from JSON into {dir}

nipy / heudiconv

Flexible DICOM conversion into structured directory layouts

https://heudiconv.readthedocs.io

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Reading Phase Encoding from JSON into {dir} #704

Open amirhusseinab opened 1 year ago

amirhusseinab commented 1 year ago

Summary

Hi,

I couldn't find any information about it, so I'm asking here. Is it possible to automatically derive the phase encoding direction from the JSON file into dir-{dir}?

I'm working on a dataset with variable and somehow confusing naming schemes between acquisition sites.

Best, Amir

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Heudiconv version: v 0.13.1

yarikoptic commented 1 year ago

in current implementation the logic in heuristics or code doesn't have any ability to load metadata from sidecar .json files since heuristic runs before dcm2niix.