Recently, I am learning HeuDiConv. But I encountering a problem while running this command:
docker run --rm -it -v /home/ccb/zinn/BIDS:/base nipy/heudiconv:latest -d /base/Dicom/sub-{subject}/ses-{session}/*/*.dcm -o /base/Nifti/ -f convertall -s 105 -ss 001 -c none --overwrite
I received the message:
INFO: Running heudiconv version 1.0.0 latest 1.0.0
INFO: Need to process 0 study sessions
The path of data is /home/ccb/zinn/BIDS/Dicom and my data file is organized thusly:
I have shared my folders /home within the docker shared folders settings.
And I also used the following command to check the path.
docker run --rm -it -v /home/ccb/zinn/BIDS:/base --entrypoint=bash nipy/heudiconv:latest
It showed:
(base) root@41ef3845a384:/# ls -lh /base/Dicom/sub-105/ses-001total 16Kdrwxrwxrwx 2 root root 4.0K Nov 25 2023 anatdrwxrwxrwx 2 root root 12K Nov 25 2023 func
Is it my Dicom files are not being found? How can I solve this problem?
Hi,
Recently, I am learning HeuDiConv. But I encountering a problem while running this command:
docker run --rm -it -v /home/ccb/zinn/BIDS:/base nipy/heudiconv:latest -d /base/Dicom/sub-{subject}/ses-{session}/*/*.dcm -o /base/Nifti/ -f convertall -s 105 -ss 001 -c none --overwriteI received the message: INFO: Running heudiconv version 1.0.0 latest 1.0.0 INFO: Need to process 0 study sessions
The path of data is
/home/ccb/zinn/BIDS/Dicomand my data file is organized thusly:I have shared my folders
/homewithin the docker shared folders settings.And I also used the following command to check the path.
docker run --rm -it -v /home/ccb/zinn/BIDS:/base --entrypoint=bash nipy/heudiconv:latestIt showed:(base) root@41ef3845a384:/# ls -lh /base/Dicom/sub-105/ses-001total 16Kdrwxrwxrwx 2 root root 4.0K Nov 25 2023 anatdrwxrwxrwx 2 root root 12K Nov 25 2023 funcIs it my Dicom files are not being found? How can I solve this problem?
Thanks a lot for any info.
Summary
Platform details:
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[x] Local environment: Ubuntu 20.04.5 LTS
[ ] Container
Heudiconv version: