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nipy / heudiconv

Flexible DICOM conversion into structured directory layouts
https://heudiconv.readthedocs.io
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Dicom to BIDS--Manual renaming Help! #771

Open s-madhavan opened 2 months ago

s-madhavan commented 2 months ago
Hi all, I'm trying to convert Phillips scanner data from DICOM to BIDS using heudiconv and its giving me an issue nibabel.nicom.dicomwrappers.WrapperError: File contains more than one StackID. Cannot handle multi-stack files Currently heudiconv doesn't support multi stack IDs. I've also tried using dcm2niix but that creates an issue of FileNotFoundError: [Errno 2] No such file or directory: ‘/fs/ess/PAS2302/Subbi/TURBO/TERBO/data/YT/DICOM/BIDS/tmp_dcm2bids/sub-YT0691035i_ses-1_tmp’ Has anyone manually converted dcm to niix and then renamed the files that way using a config file to rename? Can you share your shell or Python script? I'm not sure how to proceed with these scans since converting them to BIDS has been really a hassle for a while. Thanks. --Subbi M. ### Summary

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