events files get re-created for existing bold files (batch/incremental mode) - Githubissues

nipy / heudiconv

Flexible DICOM conversion into structured directory layouts

https://heudiconv.readthedocs.io

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events files get re-created for existing bold files (batch/incremental mode) #775

Open bpinsard opened 4 months ago

bpinsard commented 4 months ago

Summary

This section of code should be extracted from populate_aggregated_jsons and populate_aggregated_jsons and triggered when converting bold files only (or asl too maybe). https://github.com/nipy/heudiconv/blob/86d22104bc0a6eb4fc488c0f083c52008815b1af/heudiconv/bids.py#L275-L284

problems:

it recreates template event files for all existing bold, not just the one that were created by the current heudiconv call.
it is skipped with notop option while it is not "top-level" files .
ideally it should be able to check for a matching existing top-level events files before creating it.

Platform details:

Choose one:

[ x] Local environment

python3.8
[ ] Container
Heudiconv version:

latest.