yarikoptic
commented
2 months ago As it is only reproin heuristic which uses it, indeed we could just lower this from WARNING to INFO so you should be safely to ignore this warning. Or do you observe some unexpected/incorrect functionin?
It is strange that you only started to get this warning only now since looking at git diff v0.10.0.. -- heu*/parser.py warning was already there.
FWIW, since longitudinal study -- I would have recommended to use exactly the same container (heudiconv, dcm2niix, etc) as before, or reconvert all the data, since you do not want to add any kind of variability across subjects due to possibly differences in how we layout data etc. Why did you switch from 0.10.0?
WilliamFCB
github-actions[bot]
Summary
Using Heudiconv 1.2.0 (but also 1.1.6) I get the error:" WARNING: Heuristic is missing an
infotoidsmethod, assigning empty method and using provided subject id viakaninen003. Providesessionandlocatorfields for best results." when bidsyfying dicom data.I have no problems bidsifying data when using 0.10.0 ( I used this version until now because the data is part of a longitudinal study)
Heuiconv command:
singularity exec --cleanenv --contain \ -B /mnt/projects \ ${heudiconv_sif} heudiconv \ --files ${DICOM_FILES} \ -s ${sourceid} \ -ss ${session} \ -f ${heuristic} \ -c dcm2niix \ -b \ -g all \ -o ${RAWBIDS_DIR} \ --overwrite \ --minmeta
As far as I can tell, the heudiconv setup did not change, but I might have missed it. Any ideas?
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