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nipy / mindboggle

Automated anatomical brain label/shape analysis software (+ website)
http://mindboggle.info
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Data files are downloaded even if they are already in the cache #110

Closed ntraut closed 7 years ago

ntraut commented 7 years ago

I am trying to run mindboggle offline, but I cannot since mindboggle does not look for cached files correctly. For example the file OASIS-30_Atropos_template_to_MNI152_affine.txt is saved under the name OASIS-30_Atropos_template_to_MNI152_affine.txt.txt so mindboggle does not find it.

binarybottle commented 7 years ago

I am updating mindboggle so that it is installed with the data files (since they are less than 400 kb) so that they won't need to be downloaded/cached. I will alert you when it's ready.

ntraut commented 7 years ago

Thanks. In fact a simple solution is just to manually remove the extra extension, but I just wanted to warn you about this issue.

binarybottle commented 7 years ago

I really appreciate the alert. I was expecting to include more files for download and use by mindboggle, but currently am only doing so for docstring tests, so making mindboggle totally offline would be a good thing anyway. I have updated mindboggle and will alert you when the docker image is ready for download...

binarybottle commented 7 years ago

I have created a new Docker container that will run FreeSurfer, ANTs, and the revised Mindboggle. Please see the new docker pull and run instructions (http://mindboggle.readthedocs.io/en/latest/#installing-mindboggle).