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nipy / mindboggle

Automated anatomical brain label/shape analysis software (+ website)
http://mindboggle.info
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Running Mindboggle on multiple subjects on a cluster #141

Closed binarybottle closed 6 years ago

binarybottle commented 6 years ago

@mgxd wrote the following in an email to help others run Mindboggle on a cluster:

I've added the two scripts I call to a gist - the first script submit_mindboggle.sh grabs all subject directories and creates a job array across subjects calling ss_mindboggle.sh The other script assigns the working directory, points to the container/data, and runs the mindboggle123 pipeline. There are some additional comments within the scripts.

https://gist.github.com/mgxd/f2d105d3694d42ca9d02239147476d4d

Our cluster uses SLURM, so the commands are specific to that resource manager.

Let me know if you have any questions!

  • Mathias

Mathias Goncalves Technical Associate Gabrieli Lab, MIT