nipy / mindboggle

Automated anatomical brain label/shape analysis software (+ website)
http://mindboggle.info
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cannot execute binary file: Exec format error #162

Closed greedyscript closed 5 years ago

greedyscript commented 5 years ago

Hello, I am encountering a simple error in the dockerized version of mindboggle. This is the first time I have this error, and pulled the docker version yesterday. Have you guys had this error before? Using the example image:

HOST=/data DOCK=/home/jovyan/work IMAGE=$DOCK/Mri_Data/T1.nii.gz ID=T1w docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle $IMAGE --id $ID INFO: /root/matlab/startup.m does not exist ... creating /neurodocker/startup.sh: line 5: /home/jovyan/work/Mri_Data/T1.nii.gz: cannot execute binary file: Exec format error

Thanks! Carlos

satra commented 5 years ago

@cgutierrez19 - the command now expects mindboggle123 as such:

docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle mindboggle123 $IMAGE --id $ID

let us know if that works.

greedyscript commented 5 years ago

Thank you Satra, it's working now.