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nipy / mindboggle

Automated anatomical brain label/shape analysis software (+ website)
http://mindboggle.info
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docker run command results in "Permission denied" error #178

Closed binarybottle closed 5 years ago

binarybottle commented 5 years ago

docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle $IMAGE --id $ID

INFO: /root/matlab/startup.m does not exist ... creating /neurodocker/startup.sh: line 5: /home/jovyan/work/Data/brains/example_mri_data/T1.nii.gz: Permission denied

hahaai commented 5 years ago

Hi Arno,

I had the same issue today. After searched online, I found that Satra provided a different way to run the mind boggle and it works.

docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle mindboggle123 $IMAGE --id $ID

https://github.com/nipy/mindboggle/issues/162

Thanks.

Best, Lei

binarybottle commented 5 years ago

OF COURSE! Thank you, Lei! Closing this issue!