--atlases only resulting in one DataSink output

[binarybottle]

i have updated the mindboggle software, the mindboggle outputs in dropbox, and the mindboggle.info/users/README.html website with the new outputs. i am happy with the output naming except for one thing: when i run mindboggle with --atlases, where the list of atlases is appended to mindboggle's default atlas, this should result in an iterable and corresponding folders distinguishing outputs from each atlas, but doesn't. only one atlas's results make it from the working directory to the output directory.

(see lines 273 and 1554 in mindboggle)

[binarybottle]

All atlases' results are faithfully saved in the working directory in folders named with long number-and-letter strings, whether the iterable contains strings or lists. The first gets overwritten by the next in the output (DataSink) directory, and the funny folder names are not to be seen in the output directory.

[binarybottle]

Ah, I think I understand party if the problem now. The iterable is a list of strings for the full paths to the atlases, not just the atlas file names. I believe the path string is saved as a string of numbers and letters. I still don't know why one overwrites the previous in the output directory.

[satra]

@binarybottle - two things:

1. get the current nipype master - that will get rid of the hashing (the string of numbers and letters)
2. your bigger problem is going to be atlas paths in iterable strings - you could see how they look - but you should replace them with indices or some such

[binarybottle]

1. I git pulled just yesterday (I can JoinNode).
2. why is this a problem -- weird characters?

[binarybottle]

Success with the newest nipype pulled from github master branch!