nipy / mindboggle

Automated anatomical brain label/shape analysis software (+ website)
http://mindboggle.info
Other
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Install error: "list of sources could not be read" #85

Closed dbkeator closed 7 years ago

dbkeator commented 7 years ago

Hi, Trying to install on MAC-OSx ver. 10.11.6. Following command "docker build -t bids/mindboggle .;" I get the following error:

Executing: gpg --ignore-time-conflict --no-options --no-default-keyring --homedir /tmp/tmp.13TFyRT0pF --no-auto-check-trustdb --trust-model always --keyring /etc/apt/trusted.gpg --primary-keyring /etc/apt/trusted.gpg --recv-keys --keyserver hkp://pgp.mit.edu:80 0xA5D32F012649A5A9 gpg: requesting key 2649A5A9 from hkp server pgp.mit.edu gpg: key 2649A5A9: public key "NeuroDebian Archive Key pkg-exppsy-maintainers@lists.alioth.debian.org" imported gpg: Total number processed: 1 gpg: imported: 1 E: Type '<!DOCTYPE' is not known on line 1 in source list /etc/apt/sources.list.d/neurodebian.sources.list E: The list of sources could not be read. The command '/bin/sh -c curl -sSL http://neuro.debian.net/lists/vivid.us-ca.full | tee /etc/apt/sources.list.d/neurodebian.sources.list && apt-key adv --recv-keys --keyserver hkp://pgp.mit.edu:80 0xA5D32F012649A5A9 && apt-get update' returned a non-zero code: 100

Thanks, Dave

mfleisch5 commented 7 years ago

I'm receiving the same error on the same software system (Mac OS X 10.11.6), it says the same thing except I either get a non-zero code: 100 or a non-zero code: 2. Very interesting.

akeshavan commented 7 years ago

You should be able to use the already-built image on DockerHub! docker pull bids/mindboggle followed by the docker run command: docker run -ti -v /Users/keshavan/Downloads/mindboggle_input_example/bids:/root/data --entrypoint /bin/bash bids/mindboggle

binarybottle commented 7 years ago

The installation page (http://mindboggle.readthedocs.io/en/latest/#installing-mindboggle) accidentally had "build" rather than "pull" in the docker command -- I apologize for the confusion!