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nipy / nipype

Workflows and interfaces for neuroimaging packages
https://nipype.readthedocs.org/en/latest/
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Traits/SQLAlchemy mapping #1018

Open maedoc opened 9 years ago

maedoc commented 9 years ago

Is there any interest in hooking up a SQL database to nipype interfaces, workflows, monitor what's running, etc.?

blakedewey commented 9 years ago

Huge interest from me. We use SQL for all processing tracking and hacking my way through it has been difficult.

satra commented 9 years ago

i would propose we create a logging service with multiple backends for this. one of the key things we want to standardize is provenance tracking. there is already some effort in provenance.py. but instead of writing out these things at the end of execution, we literally want the information to be sent as messages.

currently we are using RDF to store such information and it's likely that we will continue to do so. you can always convert a subset of the graph to a relational table.

btw, have any of you used the provenance output from nipype?

djarecka commented 6 years ago

is there still any interest in it?

blakedewey commented 6 years ago

Still interest for me!