Closed vsaase closed 8 years ago
Hi, I'm new to nipype, this happens when I try to run the following code:
from os.path import abspath from nipype.workflows.dmri.fsl.artifacts import all_fmb_pipeline allcorr = all_fmb_pipeline() allcorr.inputs.inputnode.in_file = abspath('Pres2.nii.gz') allcorr.inputs.inputnode.in_bval = abspath('Pres2.bval') allcorr.inputs.inputnode.in_bvec = abspath('Pres2.bvec') allcorr.inputs.inputnode.bmap_mag = abspath('Pres2_grefieldmappings010a1001.nii.gz') allcorr.inputs.inputnode.bmap_pha = abspath('Pres2_grefieldmappings011a2001.nii.gz') allcorr.inputs.inputnode.epi_param = abspath('epi_param.txt') allcorr.run()
https://gist.github.com/vsaase/436b47f2eb8652446853#file-crash-20151003-165858-brain-b0_avg-pklz
output from nipype.get_info():
{'commit_hash': 'f9c98ba', 'commit_source': 'archive substitution', 'networkx_version': '1.9', 'nibabel_version': '2.0.1', 'numpy_version': '1.8.2', 'pkg_path': '/usr/lib/python2.7/dist-packages/nipype', 'scipy_version': '0.14.0', 'sys_executable': '/usr/bin/python', 'sys_platform': 'linux2', 'sys_version': '2.7.9 (default, Mar 1 2015, 12:57:24) \n[GCC 4.9.2]', 'traits_version': '4.4.0'}
Thanks for reporting, I take on this.
Hi, I'm new to nipype, this happens when I try to run the following code:
https://gist.github.com/vsaase/436b47f2eb8652446853#file-crash-20151003-165858-brain-b0_avg-pklz
output from nipype.get_info():