fsl.model.Cluster namespace problem

nipy / nipype

Workflows and interfaces for neuroimaging packages

https://nipype.readthedocs.org/en/latest/

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fsl.model.Cluster namespace problem #1487

Open cni-md opened 8 years ago

cni-md commented 8 years ago

Hi, I was wondering why my fsl.model.Cluster Node was not working properly and found that on my Computer a file /usr/bin/cluster exisits. Unfortunately this a completely different programm.

source /etc/fsl/fsl.sh will append the location of the FSL commands at the very end of $PATH.

Is it possible to call the FSL commands in a more robust way with absolute path?

satra commented 8 years ago

@cni-md - one possibility (specific to FSL, and a few other programs - freesurfer, afni, may be to augment by adding $FSLDIR/bin/on the system executing the command)

mwaskom commented 8 years ago