STY: Enforce ruff rules

[DimitriPapadopoulos]

Summary

Disable some rules and postpone fixes.

Requires #3689.

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 36.48069% with 148 lines in your changes missing coverage. Please review.

Project coverage is 73.14%. Comparing base (3cbebe3) to head (8f84741).

Files with missing lines	Patch %	Lines
nipype/interfaces/spm/preprocess.py	6.25%	15 Missing :warning:
nipype/interfaces/fsl/model.py	21.42%	11 Missing :warning:
nipype/interfaces/cmtk/nx.py	0.00%	10 Missing :warning:
nipype/interfaces/cmtk/convert.py	0.00%	8 Missing :warning:
nipype/interfaces/fsl/preprocess.py	0.00%	8 Missing :warning:
nipype/interfaces/fsl/utils.py	0.00%	8 Missing :warning:
nipype/interfaces/io.py	11.11%	8 Missing :warning:
nipype/utils/filemanip.py	12.50%	7 Missing :warning:
nipype/algorithms/modelgen.py	50.00%	5 Missing :warning:
...ype/interfaces/freesurfer/tests/test_preprocess.py	0.00%	5 Missing :warning:
... and 32 more

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #3690 +/- ## ========================================== + Coverage 73.13% 73.14% +0.01% ========================================== Files 1278 1278 Lines 59356 59345 -11 ========================================== - Hits 43411 43410 -1 + Misses 15945 15935 -10 ```

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[effigies]

Just realized this is still in draft. Will hold off on further review for now.