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nipype / pydra

Pydra Dataflow Engine
https://nipype.github.io/pydra/
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developer installation doc needs to be updated #615

Closed yibeichan closed 1 year ago

yibeichan commented 1 year ago

in Readme, Developer installation is illustrated as the following:

Pydra requires Python 3.7+. To install in developer mode:
git clone git@github.com:nipype/pydra.git
cd pydra
pip install -e ".[dev]"

However, after the recent update, setup.cfg has been removed; instead, pyproject.toml has been used. pip install -e ".[dev]" needs to be updated. So does pip install -e ".[dask]"

Happy New Year!

effigies commented 1 year ago

I'm not seeing what the issue is. Does pip install -e ".[dev]" not work for you? What version of pip are you using?

yibeichan commented 1 year ago

Yes! I got this error

ERROR: File "setup.py" or "setup.cfg" not found. Directory cannot be installed in editable mode: /Users/yibeichen/GDrive/GitHub/pydra
(A "pyproject.toml" file was found, but editable mode currently requires a setuptools-based build.)

my pip version is pip 21.2.2 from /Users/yibeichen/miniconda3/envs/pydra/lib/python3.7/site-packages/pip (python 3.7)

ghisvail commented 1 year ago

You need at least Pip version 21.3 which supports PEP-610.

yibeichan commented 1 year ago

thank you! well I just realized that I can upgrade pip and try it again. So I did... and it works.....

ghisvail commented 1 year ago

I am used to running pip install --upgrade pip whenever I instantiate a new virtual environment, so I had to look it up to find the exact version which introduced the necessary support.

yibeichan commented 1 year ago

Thanks for the tips! I had this conda env last summer and didn't upgrade it for a while...