nipype / pydra

Pydra Dataflow Engine
https://nipype.github.io/pydra/
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Cannot run Pydra Tutorial in Binder as markdown hasn't been compiled #674

Open tclose opened 11 months ago

tclose commented 11 months ago

There doesn't seem to be way to launch the tutorial when using binder, as the tutorial pages haven't been compiled into *.ipynb files.

You could do this in an GH Action on push to master, but that would require writing a new commit to the repo I think...

effigies commented 11 months ago

How does binder find out what to install? If you add jupytext to the environment, it should work.

satra commented 11 months ago

@tclose - if you right click on the md file and open as notebook that should give you the notebook interface. it's possible given when these files were created that the metadata in the header may be off for opening automatically. jupytext is installed in that environment.

effigies commented 11 months ago

It seems that the config can be set in JupyterLab to open as a notebook by default: https://jupytext.readthedocs.io/en/latest/text-notebooks.html#with-a-single-click

I'm not sure how to get that config into binder by default, yet.

effigies commented 11 months ago

Possibly this: https://jupyterlab.readthedocs.io/en/stable/user/binder.html#customize-user-settings