It probably was caused by the chromosomes format in the input hg19 bam file. Please make sure the chromosomes in the input bam like: chr1, chr2 ... instead of 1,2...

niu-lab / msisensor2

Microsatellite instability (MSI) detection for tumor only data.

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It probably was caused by the chromosomes format in the input hg19 bam file. Please make sure the chromosomes in the input bam like: chr1, chr2 ... instead of 1,2... #14

Open vlakhujani opened 4 years ago

vlakhujani commented 4 years ago

Can this portion be added in the documentation?

It probably was caused by the chromosomes format in the input hg19 bam file. Please make sure the chromosomes in the input bam like: chr1, chr2 ... instead of 1,2...

Originally posted by @Beifang in https://github.com/niu-lab/msisensor2/issues/5#issuecomment-548299369