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niuhuifei / popoolation

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about pool size #1

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Hi RoKofler,

Thanks for creating this beautiful software for the PopGen(omics) community.

I have a stupid question about the pool size in this commandline.
perl Variance-sliding.pl --input dmel.pileup --output dmel.pi --measure pi 
--window-size 10000 --step-size 10000 --min-count 2 --min-coverage 4 
--max-coverage 400 --min-qual 20 --pool-size 500

Does 500 stands for number of individuals whose genomic DNA was mixed together 
and sequenced in a single lane or several lanes ?

Elzed

Original issue reported on code.google.com by elzedliu on 15 Dec 2010 at 7:29

GoogleCodeExporter commented 9 years ago 
Sorry for the late response, I didn't see it any earlier....
Exactly, but you should propably use the chromosomes instead of individuals
2x500

best ro

Original comment by RoKof...@gmail.com on 25 Mar 2011 at 3:34