search

niuhuifei / popoolation

Automatically exported from code.google.com/p/popoolation
0 stars 0 forks source link

Mapping software #8

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Hi,

I try to use Popoolation with .sam from Bowtie2 and not BWA, because Bowtie2 
parameters interest me, but I obtain only "na" in the final output.

Despite many tests I don't find solution and I don't know which step is 
problematic...

Do you have any ideas?

Thanks

Jeremy

Original issue reported on code.google.com by mr.gauth...@gmail.com on 13 May 2013 at 9:41

GoogleCodeExporter commented 9 years ago 
it should not make a difference whether you use bwa or bowtie,
as long as you obtain a valid pileup file.
maybe the quality encoding?
did you make sure that you used the right quality encoding?

Original comment by RoKof...@gmail.com on 5 Mar 2014 at 10:07