Popoolation2 mpileup2sync error

[GoogleCodeExporter]

Dear Robert, 

What is the expected output? What do you see instead?
I have been trying to convert a mpileup format file to a sync file. But I am 
getting this following error:

Exception in thread "main" java.lang.IllegalArgumentException: An error occured 
during parsing of the mpileup;
Please make sure you are a.) using the correct encoding and b.) using the 
correct mpileup format
    at BatchProcessor.processBatch(BatchProcessor.java:43)
    at Mpileup2SyncFramework.run(Mpileup2SyncFramework.java:55)
    at CommandLineParser.parseArguments(CommandLineParser.java:67)
    at Mpileup2syncMain.main(Mpileup2syncMain.java:17)

What version of the product are you using? On what operating system?
revision 179. I have recently downloaded this version using the command: 'svn 
checkout http://popoolation2.googlecode.com/svn/trunk/ popoolation2-read-only'

Please provide any additional information below.
I have previously did convert an mpileup file into a sync file using an old 
version (popoolation2_1201). No problems at all. I am having this problem only 
when I am using the new version.

Thanks for your help.

Saro

Original issue reported on code.google.com by saro.t...@gmail.com on 24 Oct 2012 at 11:06

[GoogleCodeExporter]

helo saro, can u please paste a short example of your mpileup, and your command 
line arguments?
best ro

Original comment by RoKof...@gmail.com on 30 Oct 2012 at 8:13