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nix-community / poetry2nix

Convert poetry projects to nix automagically [maintainer=@adisbladis,@cpcloud]
MIT License
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installation fails for scrapy (because of m2r?) #114

Closed MMesch closed 4 years ago

MMesch commented 4 years ago

There is some issue with the m2r package. I don't really know how to debug this, maybe it is simple.

Error message ``` Processing /build/m2r-0.2.1 Building wheels for collected packages: m2r Building wheel for m2r (setup.py) ... done Created wheel for m2r: filename=m2r-0.2.1-py3-none-any.whl size=10537 sha256=140fb306d1b9734b72d3e984f4b3d29e14abcccbe81e52d7c4e661c5c0a0c2da Stored in directory: /build/pip-ephem-wheel-cache-i1vpl30x/wheels/13/6b/be/cd806007f16778d487f4b97c6452d382784ac2b891d824641c Successfully built m2r Finished creating a wheel... Finished executing pipBuildPhase installing Executing pipInstallPhase /build/m2r-0.2.1/dist /build/m2r-0.2.1 Processing ./m2r-0.2.1-py3-none-any.whl Requirement already satisfied: mistune in /nix/store/85hip2vz4dlcvy4r4nrnwfxk56das34f-python3.7-mistune-0.8.4/lib/python3.7/site-packages (from m2r==0.2.1) (0.8.4) Requirement already satisfied: docutils in /nix/store/0a96f9rhvkjmrfk87zd10na09argdnvb-python3.7-docutils-0.16/lib/python3.7/site-packages (from m2r==0.2.1) (0.16) Installing collected packages: m2r WARNING: The script m2r is installed in '/nix/store/6w5r4jgvm4hmq7j3x9avwzfr4n320873-python3.7-m2r-0.2.1/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed m2r-0.2.1 /build/m2r-0.2.1 Finished executing pipInstallPhase post-installation fixup shrinking RPATHs of ELF executables and libraries in /nix/store/6w5r4jgvm4hmq7j3x9avwzfr4n320873-python3.7-m2r-0.2.1 strip is /nix/store/sq2b0dqlq243mqn4ql5h36xmpplyy20k-binutils-2.31.1/bin/strip stripping (with command strip and flags -S) in /nix/store/6w5r4jgvm4hmq7j3x9avwzfr4n320873-python3.7-m2r-0.2.1/lib /nix/store/6w5r4jgvm4hmq7j3x9avwzfr4n320873-python3.7-m2r-0.2.1/bin patching script interpreter paths in /nix/store/6w5r4jgvm4hmq7j3x9avwzfr4n320873-python3.7-m2r-0.2.1 checking for references to /build/ in /nix/store/6w5r4jgvm4hmq7j3x9avwzfr4n320873-python3.7-m2r-0.2.1... Rewriting #!/nix/store/vs4vj1yzqj1bkcqkf3b6sxm6jfy1gb4j-python3-3.7.7/bin/python3.7 to #!/nix/store/vs4vj1yzqj1bkcqkf3b6sxm6jfy1gb4j-python3-3.7.7 wrapping `/nix/store/6w5r4jgvm4hmq7j3x9avwzfr4n320873-python3.7-m2r-0.2.1/bin/m2r'... Executing pythonRemoveTestsDir Finished executing pythonRemoveTestsDir pythonCatchConflictsPhase pythonRemoveBinBytecodePhase pythonImportsCheckPhase Executing pythonImportsCheckPhase ERROR: Command errored out with exit status 1: command: /nix/store/vs4vj1yzqj1bkcqkf3b6sxm6jfy1gb4j-python3-3.7.7/bin/python3.7 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/build/pip-req-build-wqpoxc63/setup.py'"'"'; __file__='"'"'/build/pip-req-build-wqpoxc63/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /build/pip-req-build-wqpoxc63/pip-egg-info cwd: /build/pip-req-build-wqpoxc63/ Complete output (43 lines): WARNING: The directory '/homeless-shelter/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag. WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError(': Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/m2r/ WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError(': Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/m2r/ WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError(': Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/m2r/ WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError(': Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/m2r/ WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError(': Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/m2r/ ERROR: Could not find a version that satisfies the requirement m2r (from versions: none) ERROR: No matching distribution found for m2r !!! m2r not found, long_description is bad, don't upload this to PyPI !!! Traceback (most recent call last): File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/setuptools/installer.py", line 128, in fetch_build_egg subprocess.check_call(cmd) File "/nix/store/vs4vj1yzqj1bkcqkf3b6sxm6jfy1gb4j-python3-3.7.7/lib/python3.7/subprocess.py", line 363, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['/nix/store/vs4vj1yzqj1bkcqkf3b6sxm6jfy1gb4j-python3-3.7.7/bin/python3.7', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/build/tmp1t4mfmj5', '--quiet', 'm2r']' returned non-zero exit status 1. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/build/pip-req-build-wqpoxc63/setup.py", line 58, in 'Programming Language :: Python :: 3.8', File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/setuptools/__init__.py", line 143, in setup _install_setup_requires(attrs) File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/setuptools/__init__.py", line 138, in _install_setup_requires dist.fetch_build_eggs(dist.setup_requires) File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/setuptools/dist.py", line 721, in fetch_build_eggs replace_conflicting=True, File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/pkg_resources/__init__.py", line 783, in resolve replace_conflicting=replace_conflicting File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/pkg_resources/__init__.py", line 1066, in best_match return self.obtain(req, installer) File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/pkg_resources/__init__.py", line 1078, in obtain return installer(requirement) File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/setuptools/dist.py", line 777, in fetch_build_egg return fetch_build_egg(self, req) File "/nix/store/kxri2ybkwkzpqms4qf5p8n7wipbb64h9-python3.7-setuptools-45.2.0/lib/python3.7/site-packages/setuptools/installer.py", line 130, in fetch_build_egg raise DistutilsError(str(e)) distutils.errors.DistutilsError: Command '['/nix/store/vs4vj1yzqj1bkcqkf3b6sxm6jfy1gb4j-python3-3.7.7/bin/python3.7', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/build/tmp1t4mfmj5', '--quiet', 'm2r']' returned non-zero exit status 1. ---------------------------------------- ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. builder for '/nix/store/lpng06rglir3c8i4vg29iwk20bw93lba-python3.7-automat-20.2.0.drv' failed with exit code 1 ```
commands, pyproject.toml, poetry.lock, shell.nix **Commands** copy the files below in a folder and type `nix-shell` **pyproject.toml** ``` [tool.poetry] name = "scraper" version = "0.1.0" description = "" authors = ["MMesch"] [tool.poetry.dependencies] python = "^3.6.1" scrapy = "2.1.0" m2r = "*" numpy = "*" [build-system] requires = ["poetry>=0.12"] build-backend = "poetry.masonry.api" ``` **poetry.lock** file: ``` [[package]] category = "main" description = "Classes Without Boilerplate" name = "attrs" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "19.3.0" [package.extras] azure-pipelines = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "pytest-azurepipelines"] dev = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "sphinx", "pre-commit"] docs = ["sphinx", "zope.interface"] tests = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] [[package]] category = "main" description = "Self-service finite-state machines for the programmer on the go." name = "automat" optional = false python-versions = "*" version = "20.2.0" [package.dependencies] attrs = ">=19.2.0" six = "*" [package.extras] visualize = ["graphviz (>0.5.1)", "Twisted (>=16.1.1)"] [[package]] category = "main" description = "Foreign Function Interface for Python calling C code." name = "cffi" optional = false python-versions = "*" version = "1.14.0" [package.dependencies] pycparser = "*" [[package]] category = "main" description = "Symbolic constants in Python" name = "constantly" optional = false python-versions = "*" version = "15.1.0" [[package]] category = "main" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." name = "cryptography" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" version = "2.9.2" [package.dependencies] cffi = ">=1.8,<1.11.3 || >1.11.3" six = ">=1.4.1" [package.extras] docs = ["sphinx (>=1.6.5,<1.8.0 || >1.8.0)", "sphinx-rtd-theme"] docstest = ["doc8", "pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"] idna = ["idna (>=2.1)"] pep8test = ["flake8", "flake8-import-order", "pep8-naming"] test = ["pytest (>=3.6.0,<3.9.0 || >3.9.0,<3.9.1 || >3.9.1,<3.9.2 || >3.9.2)", "pretend", "iso8601", "pytz", "hypothesis (>=1.11.4,<3.79.2 || >3.79.2)"] [[package]] category = "main" description = "cssselect parses CSS3 Selectors and translates them to XPath 1.0" name = "cssselect" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "1.1.0" [[package]] category = "main" description = "Docutils -- Python Documentation Utilities" name = "docutils" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" version = "0.16" [[package]] category = "main" description = "A featureful, immutable, and correct URL for Python." name = "hyperlink" optional = false python-versions = "*" version = "19.0.0" [package.dependencies] idna = ">=2.5" [[package]] category = "main" description = "Internationalized Domain Names in Applications (IDNA)" name = "idna" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "2.9" [[package]] category = "main" description = "" name = "incremental" optional = false python-versions = "*" version = "17.5.0" [package.extras] scripts = ["click (>=6.0)", "twisted (>=16.4.0)"] [[package]] category = "main" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." name = "lxml" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" version = "4.5.1" [package.extras] cssselect = ["cssselect (>=0.7)"] html5 = ["html5lib"] htmlsoup = ["beautifulsoup4"] source = ["Cython (>=0.29.7)"] [[package]] category = "main" description = "Markdown and reStructuredText in a single file." name = "m2r" optional = false python-versions = "*" version = "0.2.1" [package.dependencies] docutils = "*" mistune = "*" [[package]] category = "main" description = "The fastest markdown parser in pure Python" name = "mistune" optional = false python-versions = "*" version = "0.8.4" [[package]] category = "main" description = "NumPy is the fundamental package for array computing with Python." name = "numpy" optional = false python-versions = ">=3.5" version = "1.18.4" [[package]] category = "main" description = "Parsel is a library to extract data from HTML and XML using XPath and CSS selectors" name = "parsel" optional = false python-versions = "*" version = "1.6.0" [package.dependencies] cssselect = ">=0.9" lxml = "*" six = ">=1.6.0" w3lib = ">=1.19.0" [[package]] category = "main" description = "Pure-Python robots.txt parser with support for modern conventions" name = "protego" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" version = "0.1.16" [package.dependencies] six = "*" [[package]] category = "main" description = "ASN.1 types and codecs" name = "pyasn1" optional = false python-versions = "*" version = "0.4.8" [[package]] category = "main" description = "A collection of ASN.1-based protocols modules." name = "pyasn1-modules" optional = false python-versions = "*" version = "0.2.8" [package.dependencies] pyasn1 = ">=0.4.6,<0.5.0" [[package]] category = "main" description = "C parser in Python" name = "pycparser" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "2.20" [[package]] category = "main" description = "Multi-producer-multi-consumer signal dispatching mechanism" name = "pydispatcher" optional = false python-versions = "*" version = "2.0.5" [[package]] category = "main" description = "Hamcrest framework for matcher objects" name = "pyhamcrest" optional = false python-versions = ">=3.5" version = "2.0.2" [[package]] category = "main" description = "Python wrapper module around the OpenSSL library" name = "pyopenssl" optional = false python-versions = "*" version = "19.1.0" [package.dependencies] cryptography = ">=2.8" six = ">=1.5.2" [package.extras] docs = ["sphinx", "sphinx-rtd-theme"] test = ["flaky", "pretend", "pytest (>=3.0.1)"] [[package]] category = "main" description = "Multi-producer-multi-consumer signal dispatching mechanism" marker = "platform_python_implementation == \"PyPy\"" name = "pypydispatcher" optional = false python-versions = "*" version = "2.1.2" [[package]] category = "main" description = "Collection of persistent (disk-based) queues" name = "queuelib" optional = false python-versions = "*" version = "1.5.0" [[package]] category = "main" description = "A high-level Web Crawling and Web Scraping framework" name = "scrapy" optional = false python-versions = ">=3.5" version = "2.1.0" [package.dependencies] PyDispatcher = ">=2.0.5" PyPyDispatcher = ">=2.1.0" Twisted = ">=17.9.0" cryptography = ">=2.0" cssselect = ">=0.9.1" lxml = ">=3.5.0" parsel = ">=1.5.0" protego = ">=0.1.15" pyOpenSSL = ">=16.2.0" queuelib = ">=1.4.2" service-identity = ">=16.0.0" w3lib = ">=1.17.0" "zope.interface" = ">=4.1.3" [[package]] category = "main" description = "Service identity verification for pyOpenSSL & cryptography." name = "service-identity" optional = false python-versions = "*" version = "18.1.0" [package.dependencies] attrs = ">=16.0.0" cryptography = "*" pyasn1 = "*" pyasn1-modules = "*" [package.extras] dev = ["coverage (>=4.2.0)", "pytest", "sphinx", "idna", "pyopenssl"] docs = ["sphinx"] idna = ["idna"] tests = ["coverage (>=4.2.0)", "pytest"] [[package]] category = "main" description = "Python 2 and 3 compatibility utilities" name = "six" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" version = "1.15.0" [[package]] category = "main" description = "An asynchronous networking framework written in Python" name = "twisted" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" version = "20.3.0" [package.dependencies] Automat = ">=0.3.0" PyHamcrest = ">=1.9.0,<1.10.0 || >1.10.0" attrs = ">=19.2.0" constantly = ">=15.1" hyperlink = ">=17.1.1" incremental = ">=16.10.1" "zope.interface" = ">=4.4.2" [package.extras] all_non_platform = ["pyopenssl (>=16.0.0)", "service_identity (>=18.1.0)", "idna (>=0.6,<2.3 || >2.3)", "pyasn1", "cryptography (>=2.5)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "soappy", "pyserial (>=3.0)", "h2 (>=3.0,<4.0)", "priority (>=1.1.0,<2.0)", "pywin32 (!=226)"] conch = ["pyasn1", "cryptography (>=2.5)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)"] dev = ["pyflakes (>=1.0.0)", "twisted-dev-tools (>=0.0.2)", "python-subunit", "sphinx (>=1.3.1)", "towncrier (>=17.4.0)"] http2 = ["h2 (>=3.0,<4.0)", "priority (>=1.1.0,<2.0)"] macos_platform = ["pyobjc-core", "pyobjc-framework-cfnetwork", "pyobjc-framework-cocoa", "pyopenssl (>=16.0.0)", "service_identity (>=18.1.0)", "idna (>=0.6,<2.3 || >2.3)", "pyasn1", "cryptography (>=2.5)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "soappy", "pyserial (>=3.0)", "h2 (>=3.0,<4.0)", "priority (>=1.1.0,<2.0)", "pywin32 (!=226)"] osx_platform = ["pyobjc-core", "pyobjc-framework-cfnetwork", "pyobjc-framework-cocoa", "pyopenssl (>=16.0.0)", "service_identity (>=18.1.0)", "idna (>=0.6,<2.3 || >2.3)", "pyasn1", "cryptography (>=2.5)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "soappy", "pyserial (>=3.0)", "h2 (>=3.0,<4.0)", "priority (>=1.1.0,<2.0)", "pywin32 (!=226)"] serial = ["pyserial (>=3.0)", "pywin32 (!=226)"] soap = ["soappy"] tls = ["pyopenssl (>=16.0.0)", "service_identity (>=18.1.0)", "idna (>=0.6,<2.3 || >2.3)"] windows_platform = ["pywin32 (!=226)", "pyopenssl (>=16.0.0)", "service_identity (>=18.1.0)", "idna (>=0.6,<2.3 || >2.3)", "pyasn1", "cryptography (>=2.5)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "soappy", "pyserial (>=3.0)", "h2 (>=3.0,<4.0)", "priority (>=1.1.0,<2.0)", "pywin32 (!=226)"] [[package]] category = "main" 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overrides; }; in pkgs.mkShell { name="transformers"; buildInputs = with pkgs; [ python ]; } ```
MMesch commented 4 years ago

fixed with an override:

    automat = super.automat.overridePythonAttrs (
      old: rec {
        propagatedBuildInputs = old.propagatedBuildInputs ++ [self.m2r];
      });
    parsel = super.parsel.overridePythonAttrs (
      old: rec {
        nativeBuildInputs = old.nativeBuildInputs ++ [self.pytest-runner];
      });