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Convert poetry projects to nix automagically [maintainer=@adisbladis,@cpcloud]
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Latest tensorflow not working with latest master (`Could not find a version` error) #303

Closed austin-searchpilot closed 2 years ago

austin-searchpilot commented 3 years ago

I'm trying to use the latest version of tensorflow (2.4.1) and I'm receiving the following error:

ERROR: Could not find a version that satisfies the requirement flatbuffers~=1.12.0 (from tensorflow==2.4.1) (from versions: none)
ERROR: No matching distribution found for flatbuffers~=1.12.0 (from tensorflow==2.4.1)
builder for '/nix/store/alsssigg0ra2b87080pg7mv8w7ryiw10-python3.8-tensorflow-2.4.1.drv' failed with exit code 1
cannot build derivation '/nix/store/j8ijssg1c8zy2bkrjgmwjfbbbfslidzj-python3-3.8.9-env.drv': 1 dependencies couldn't be built
error: build of '/nix/store/j8ijssg1c8zy2bkrjgmwjfbbbfslidzj-python3-3.8.9-env.drv' failed
Full log ``` These derivations will be built: /nix/store/alsssigg0ra2b87080pg7mv8w7ryiw10-python3.8-tensorflow-2.4.1.drv /nix/store/j8ijssg1c8zy2bkrjgmwjfbbbfslidzj-python3-3.8.9-env.drv building '/nix/store/alsssigg0ra2b87080pg7mv8w7ryiw10-python3.8-tensorflow-2.4.1.drv'... Sourcing python-remove-tests-dir-hook Sourcing python-catch-conflicts-hook.sh Sourcing python-remove-bin-bytecode-hook.sh Sourcing wheel setup hook Using wheelUnpackPhase Sourcing pip-install-hook Using pipInstallPhase Sourcing python-imports-check-hook.sh Using pythonImportsCheckPhase Sourcing python-namespaces-hook unpacking sources Executing wheelUnpackPhase Finished executing wheelUnpackPhase patching sources configuring no configure script, doing nothing building no Makefile, doing nothing installing Executing pipInstallPhase /private/tmp/nix-build-python3.8-tensorflow-2.4.1.drv-0/dist /private/tmp/nix-build-python3.8-tensorflow-2.4.1.drv-0 Processing ./tensorflow-2.4.1-cp38-cp38-macosx_10_11_x86_64.whl Requirement already satisfied: protobuf>=3.9.2 in /nix/store/wmqyp99fy1bzs2mhsg7fyzdxj59irzvx-python3.8-protobuf-3.16.0/lib/python3.8/site-packages (from tensorflow==2.4.1) (3.16.0) Requirement already satisfied: keras-preprocessing~=1.1.2 in /nix/store/ningn50f47j2grrsgxykldy6rk7zgd2m-python3.8-keras-preprocessing-1.1.2/lib/python3.8/site-packages (from tensorflow==2.4.1) (1.1.2) Requirement already satisfied: wrapt~=1.12.1 in /nix/store/i0h8p1ia5pa8cb6zbid0pmky6r901nmq-python3.8-wrapt-1.12.1/lib/python3.8/site-packages (from tensorflow==2.4.1) (1.12.1) Requirement already satisfied: gast==0.3.3 in /nix/store/ad9jyp9bps6wyyhs9n02glw67g23jwz0-python3.8-gast-0.3.3/lib/python3.8/site-packages (from tensorflow==2.4.1) (0.3.3) Requirement already satisfied: tensorflow-estimator<2.5.0,>=2.4.0 in /nix/store/rc1v17cc4idh20hl5nhqmlr0lfq9c0rg-python3.8-tensorflow-estimator-2.4.0/lib/python3.8/site-packages (from tensorflow==2.4.1) (2.4.0) Requirement already satisfied: grpcio~=1.32.0 in /nix/store/nxym8yv8i0163nfq5cvv6crivf8sjni2-python3.8-grpcio-1.32.0/lib/python3.8/site-packages (from tensorflow==2.4.1) (1.32.0) Requirement already satisfied: opt-einsum~=3.3.0 in /nix/store/fxx4vl2j805dsnja2w5b8vrrcpf9ja5b-python3.8-opt-einsum-3.3.0/lib/python3.8/site-packages (from tensorflow==2.4.1) (3.3.0) Requirement already satisfied: six~=1.15.0 in /nix/store/87plidff7jyahrh2hil7z8fgi5ghhlj7-python3.8-six-1.15.0/lib/python3.8/site-packages (from tensorflow==2.4.1) (1.15.0) Requirement already satisfied: google-pasta~=0.2 in /nix/store/awnciqxsdv1lkhg067mp2z3v28n6bixb-python3.8-google-pasta-0.2.0/lib/python3.8/site-packages (from tensorflow==2.4.1) (0.2.0) Requirement already satisfied: wheel~=0.35 in /nix/store/xn4dkqsjyvd4m9h093n547bvswyscs7s-python3.8-wheel-0.36.2/lib/python3.8/site-packages (from tensorflow==2.4.1) (0.36.2) ERROR: Could not find a version that satisfies the requirement flatbuffers~=1.12.0 (from tensorflow==2.4.1) (from versions: none) ERROR: No matching distribution found for flatbuffers~=1.12.0 (from tensorflow==2.4.1) builder for '/nix/store/alsssigg0ra2b87080pg7mv8w7ryiw10-python3.8-tensorflow-2.4.1.drv' failed with exit code 1 cannot build derivation '/nix/store/j8ijssg1c8zy2bkrjgmwjfbbbfslidzj-python3-3.8.9-env.drv': 1 dependencies couldn't be built error: build of '/nix/store/j8ijssg1c8zy2bkrjgmwjfbbbfslidzj-python3-3.8.9-env.drv' failed ```

Here are the relevant files to reproduce the error

pyproject.toml ```toml [tool.poetry] name = "tf" version = "0.1.0" description = "" authors = ["a"] [tool.poetry.dependencies] python = "^3.8" tensorflow = "^2.4.1" [tool.poetry.dev-dependencies] [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" ```
poetry.lock ```toml [[package]] name = "absl-py" version = "0.12.0" description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." category = "main" optional = false python-versions = "*" [package.dependencies] six = "*" [[package]] name = "astunparse" version = "1.6.3" description = "An AST unparser for Python" category = "main" optional = false python-versions = "*" [package.dependencies] six = ">=1.6.1,<2.0" [[package]] name = "cachetools" version = "4.2.2" description = "Extensible memoizing collections and decorators" category = "main" optional = false python-versions = "~=3.5" [[package]] name = "certifi" version = "2020.12.5" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false python-versions = "*" [[package]] name = "chardet" version = "4.0.0" description = "Universal encoding detector for Python 2 and 3" category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "flatbuffers" version = "1.12" description = "The FlatBuffers serialization format for Python" category = "main" optional = false python-versions = "*" [[package]] name = "gast" version = "0.3.3" description = "Python AST that abstracts the underlying Python version" category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "google-auth" version = "1.30.0" description = "Google Authentication Library" category = "main" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" [package.dependencies] cachetools = ">=2.0.0,<5.0" pyasn1-modules = ">=0.2.1" rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} six = ">=1.9.0" [package.extras] aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)"] pyopenssl = ["pyopenssl (>=20.0.0)"] reauth = ["pyu2f (>=0.1.5)"] [[package]] name = "google-auth-oauthlib" version = "0.4.4" description = "Google Authentication Library" category = "main" optional = false python-versions = ">=3.6" [package.dependencies] google-auth = ">=1.0.0" requests-oauthlib = ">=0.7.0" [package.extras] tool = ["click (>=6.0.0)"] [[package]] name = "google-pasta" version = "0.2.0" description = "pasta is an AST-based Python refactoring library" category = "main" optional = false python-versions = "*" [package.dependencies] six = "*" [[package]] name = "grpcio" version = "1.32.0" description = "HTTP/2-based RPC framework" category = "main" optional = false python-versions = "*" [package.dependencies] six = ">=1.5.2" [package.extras] protobuf = ["grpcio-tools (>=1.32.0)"] [[package]] name = "h5py" version = "2.10.0" description = "Read and write HDF5 files from Python" category = "main" optional = false python-versions = "*" [package.dependencies] numpy = ">=1.7" six = "*" [[package]] name = "idna" version = "2.10" description = "Internationalized Domain Names in Applications (IDNA)" category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "keras-preprocessing" version = "1.1.2" description = "Easy data preprocessing and data augmentation for deep learning models" category = "main" optional = false python-versions = "*" [package.dependencies] numpy = ">=1.9.1" six = ">=1.9.0" [package.extras] image = ["scipy (>=0.14)", "Pillow (>=5.2.0)"] pep8 = ["flake8"] tests = ["pandas", "pillow", "tensorflow", "keras", "pytest", "pytest-xdist", "pytest-cov"] [[package]] name = "markdown" version = "3.3.4" description = "Python implementation of Markdown." category = "main" optional = false python-versions = ">=3.6" [package.extras] testing = ["coverage", "pyyaml"] [[package]] name = "numpy" version = "1.19.5" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false python-versions = ">=3.6" [[package]] name = "oauthlib" version = "3.1.0" description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] rsa = ["cryptography"] signals = ["blinker"] signedtoken = ["cryptography", "pyjwt (>=1.0.0)"] [[package]] name = "opt-einsum" version = "3.3.0" description = "Optimizing numpys einsum function" category = "main" optional = false python-versions = ">=3.5" [package.dependencies] numpy = ">=1.7" [package.extras] docs = ["sphinx (1.2.3)", "sphinxcontrib-napoleon", "sphinx-rtd-theme", "numpydoc"] tests = ["pytest", "pytest-cov", "pytest-pep8"] [[package]] name = "protobuf" version = "3.16.0" description = "Protocol Buffers" category = "main" optional = false python-versions = "*" [package.dependencies] six = ">=1.9" [[package]] name = "pyasn1" version = "0.4.8" description = "ASN.1 types and codecs" category = "main" optional = false python-versions = "*" [[package]] name = "pyasn1-modules" version = "0.2.8" description = "A collection of ASN.1-based protocols modules." category = "main" optional = false python-versions = "*" [package.dependencies] pyasn1 = ">=0.4.6,<0.5.0" [[package]] name = "requests" version = "2.25.1" description = "Python HTTP for Humans." category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.dependencies] certifi = ">=2017.4.17" chardet = ">=3.0.2,<5" idna = ">=2.5,<3" urllib3 = ">=1.21.1,<1.27" [package.extras] security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] [[package]] name = "requests-oauthlib" version = "1.3.0" description = "OAuthlib authentication support for Requests." category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.dependencies] oauthlib = ">=3.0.0" requests = ">=2.0.0" [package.extras] rsa = ["oauthlib[signedtoken] (>=3.0.0)"] [[package]] name = "rsa" version = "4.7.2" description = "Pure-Python RSA implementation" category = "main" optional = false python-versions = ">=3.5, <4" [package.dependencies] pyasn1 = ">=0.1.3" [[package]] name = "six" version = "1.15.0" description = "Python 2 and 3 compatibility utilities" category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "tensorboard" version = "2.5.0" description = "TensorBoard lets you watch Tensors Flow" category = "main" optional = false python-versions = ">= 2.7, != 3.0.*, != 3.1.*" [package.dependencies] absl-py = ">=0.4" google-auth = ">=1.6.3,<2" google-auth-oauthlib = ">=0.4.1,<0.5" grpcio = ">=1.24.3" markdown = ">=2.6.8" numpy = ">=1.12.0" protobuf = ">=3.6.0" requests = ">=2.21.0,<3" tensorboard-data-server = ">=0.6.0,<0.7.0" tensorboard-plugin-wit = ">=1.6.0" werkzeug = ">=0.11.15" [[package]] name = "tensorboard-data-server" version = "0.6.1" description = "Fast data loading for TensorBoard" category = "main" optional = false python-versions = ">=3.6" [[package]] name = "tensorboard-plugin-wit" version = "1.8.0" description = "What-If Tool TensorBoard plugin." category = "main" optional = false python-versions = "*" [[package]] name = "tensorflow" version = "2.4.1" description = "TensorFlow is an open source machine learning framework for everyone." category = "main" optional = false python-versions = "*" [package.dependencies] absl-py = ">=0.10,<1.0" astunparse = ">=1.6.3,<1.7.0" flatbuffers = ">=1.12.0,<1.13.0" gast = "0.3.3" google-pasta = ">=0.2,<1.0" grpcio = ">=1.32.0,<1.33.0" h5py = ">=2.10.0,<2.11.0" keras-preprocessing = ">=1.1.2,<1.2.0" numpy = ">=1.19.2,<1.20.0" opt-einsum = ">=3.3.0,<3.4.0" protobuf = ">=3.9.2" six = ">=1.15.0,<1.16.0" tensorboard = ">=2.4,<3.0" tensorflow-estimator = ">=2.4.0,<2.5.0" termcolor = ">=1.1.0,<1.2.0" typing-extensions = ">=3.7.4,<3.8.0" wrapt = ">=1.12.1,<1.13.0" [[package]] name = "tensorflow-estimator" version = "2.4.0" description = "TensorFlow Estimator." category = "main" optional = false python-versions = "*" [[package]] name = "termcolor" version = "1.1.0" description = "ANSII Color formatting for output in terminal." category = "main" optional = false python-versions = "*" [[package]] name = "typing-extensions" version = "3.7.4.3" description = "Backported and Experimental Type Hints for Python 3.5+" category = "main" optional = false python-versions = "*" [[package]] name = "urllib3" version = "1.26.4" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" [package.extras] secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7,<2.0)"] brotli = ["brotlipy (>=0.6.0)"] [[package]] name = "werkzeug" version = "2.0.0" description = "The comprehensive WSGI web application library." category = "main" optional = false python-versions = ">=3.6" [package.extras] watchdog = ["watchdog"] [[package]] name = "wrapt" version = "1.12.1" description = "Module for decorators, wrappers and monkey patching." category = "main" optional = false python-versions = "*" [metadata] lock-version = "1.1" python-versions = "^3.8" content-hash = "7d7acfefd4f7ccd7f3744078fa0e511de5f187f135bdf1678563898b6d9b1302" [metadata.files] absl-py = [ {file = "absl-py-0.12.0.tar.gz", hash = "sha256:b44f68984a5ceb2607d135a615999b93924c771238a63920d17d3387b0d229d5"}, {file = "absl_py-0.12.0-py3-none-any.whl", hash = "sha256:afe94e3c751ff81aad55d33ab6e630390da32780110b5af72ae81ecff8418d9e"}, ] astunparse = [ {file = "astunparse-1.6.3-py2.py3-none-any.whl", hash = "sha256:c2652417f2c8b5bb325c885ae329bdf3f86424075c4fd1a128674bc6fba4b8e8"}, {file = "astunparse-1.6.3.tar.gz", hash = "sha256:5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872"}, ] cachetools = [ {file = "cachetools-4.2.2-py3-none-any.whl", hash = "sha256:2cc0b89715337ab6dbba85b5b50effe2b0c74e035d83ee8ed637cf52f12ae001"}, {file = "cachetools-4.2.2.tar.gz", hash = "sha256:61b5ed1e22a0924aed1d23b478f37e8d52549ff8a961de2909c69bf950020cff"}, ] certifi = [ {file = "certifi-2020.12.5-py2.py3-none-any.whl", hash = "sha256:719a74fb9e33b9bd44cc7f3a8d94bc35e4049deebe19ba7d8e108280cfd59830"}, {file = "certifi-2020.12.5.tar.gz", hash = "sha256:1a4995114262bffbc2413b159f2a1a480c969de6e6eb13ee966d470af86af59c"}, ] chardet = [ {file = "chardet-4.0.0-py2.py3-none-any.whl", hash = "sha256:f864054d66fd9118f2e67044ac8981a54775ec5b67aed0441892edb553d21da5"}, {file = "chardet-4.0.0.tar.gz", hash = "sha256:0d6f53a15db4120f2b08c94f11e7d93d2c911ee118b6b30a04ec3ee8310179fa"}, ] flatbuffers = [ {file = "flatbuffers-1.12-py2.py3-none-any.whl", hash = "sha256:9e9ef47fa92625c4721036e7c4124182668dc6021d9e7c73704edd395648deb9"}, {file = "flatbuffers-1.12.tar.gz", hash = "sha256:63bb9a722d5e373701913e226135b28a6f6ac200d5cc7b4d919fa38d73b44610"}, ] gast = [ {file = "gast-0.3.3-py2.py3-none-any.whl", hash = "sha256:8f46f5be57ae6889a4e16e2ca113b1703ef17f2b0abceb83793eaba9e1351a45"}, {file = "gast-0.3.3.tar.gz", hash = "sha256:b881ef288a49aa81440d2c5eb8aeefd4c2bb8993d5f50edae7413a85bfdb3b57"}, ] google-auth = [ {file = "google-auth-1.30.0.tar.gz", hash = "sha256:9ad25fba07f46a628ad4d0ca09f38dcb262830df2ac95b217f9b0129c9e42206"}, {file = "google_auth-1.30.0-py2.py3-none-any.whl", hash = "sha256:588bdb03a41ecb4978472b847881e5518b5d9ec6153d3d679aa127a55e13b39f"}, ] google-auth-oauthlib = [ {file = "google-auth-oauthlib-0.4.4.tar.gz", hash = "sha256:09832c6e75032f93818edf1affe4746121d640c625a5bef9b5c96af676e98eee"}, {file = "google_auth_oauthlib-0.4.4-py2.py3-none-any.whl", hash = "sha256:0e92aacacfb94978de3b7972cf4b0f204c3cd206f74ddd0dc0b31e91164e6317"}, ] google-pasta = [ {file = "google-pasta-0.2.0.tar.gz", hash = "sha256:c9f2c8dfc8f96d0d5808299920721be30c9eec37f2389f28904f454565c8a16e"}, {file = "google_pasta-0.2.0-py2-none-any.whl", hash = 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shell.nix (Note, I had to add some overrides to get this far) ```nix let sources = import ./nix/sources.nix; pkgs = import sources.nixpkgs {}; my-poetry2nix = import (fetchTarball { url = "https://github.com/nix-community/poetry2nix/archive/master.tar.gz"; }) { pkgs = pkgs; poetry = pkgs.poetry; }; # use an old version of hdf5 which is compatible with the python # package we are using hdf5-110 = pkgs.hdf5.overrideAttrs ( old: { version = "1.10.0"; src = pkgs.fetchurl { url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0.tar.bz2"; sha256 = "0a1xfj73ipykiq01n9y1d6f0k2wa972fx8xxndm0c5vkgkf71zri"; }; } ); pythonEnv = my-poetry2nix.mkPoetryEnv { python = pkgs.python38; projectDir = ./.; pyproject = ./pyproject.toml; poetrylock = ./poetry.lock; overrides = my-poetry2nix.overrides.withDefaults ( self: super: { tensorboard = super.tensorboard.overridePythonAttrs ( old: { buildInputs = old.buildInputs ++ [ self.wheel ]; } ); tensorflow = super.tensorflow.overridePythonAttrs ( old: { buildInputs = old.buildInputs ++ [ self.wheel ]; } ); h5py = super.h5py.overridePythonAttrs ( old: if old.format != "wheel" then ( let mpi = pkgs.hdf5.mpi; mpiSupport = pkgs.hdf5.mpiSupport; in { nativeBuildInputs = (old.old.nativeBuildInputs or []) ++ [ pkgs.pkg-config ]; buildInputs = (old.old.buildInputs or []) ++ [ hdf5-110 self.pkgconfig self.cython ] ++ pkgs.lib.optional mpiSupport mpi ; propagatedBuildInputs = (old.propagatedBuildInputs or []) ++ pkgs.lib.optionals mpiSupport [ self.mpi4py self.openssh ] ; preBuild = if mpiSupport then "export CC=${mpi}/bin/mpicc" else ""; HDF5_DIR = "${hdf5-110}"; HDF5_MPI = if mpiSupport then "ON" else "OFF"; # avoid strict pinning of numpy postPatch = '' substituteInPlace setup.py \ --replace "numpy ==" "numpy >=" ''; pythonImportsCheck = [ "h5py" ]; } ) else old ); } ); }; in pkgs.mkShell { buildInputs = [ pythonEnv pkgs.poetry ]; } ```
nix/sources.json ```json { "niv": { "branch": "master", "description": "Easy dependency management for Nix projects", "homepage": "https://github.com/nmattia/niv", "owner": "nmattia", "repo": "niv", "rev": "f73bf8d584148677b01859677a63191c31911eae", "sha256": "0jlmrx633jvqrqlyhlzpvdrnim128gc81q5psz2lpp2af8p8q9qs", "type": "tarball", "url": "https://github.com/nmattia/niv/archive/f73bf8d584148677b01859677a63191c31911eae.tar.gz", "url_template": "https://github.com///archive/.tar.gz" }, "nixpkgs": { "branch": "nixpkgs-unstable", "description": "A read-only mirror of NixOS/nixpkgs tracking the released channels. Send issues and PRs to", "homepage": "https://github.com/NixOS/nixpkgs", "owner": "NixOS", "repo": "nixpkgs", "rev": "719ac402b1c13bb14cc496812c67fd7f65c7bf68", "sha256": "18qx45jps9by8s7wbav8wy8c32ngh390i8yrvx2gninzdg7j8071", "type": "tarball", "url": "https://github.com/NixOS/nixpkgs/archive/719ac402b1c13bb14cc496812c67fd7f65c7bf68.tar.gz", "url_template": "https://github.com///archive/.tar.gz" } } ```
nix/sources.nix ```nix # This file has been generated by Niv. let # # The fetchers. fetch_ fetches specs of type . # fetch_file = pkgs: name: spec: let name' = sanitizeName name + "-src"; in if spec.builtin or true then builtins_fetchurl { inherit (spec) url sha256; name = name'; } else pkgs.fetchurl { inherit (spec) url sha256; name = name'; }; fetch_tarball = pkgs: name: spec: let name' = sanitizeName name + "-src"; in if spec.builtin or true then builtins_fetchTarball { name = name'; inherit (spec) url sha256; } else pkgs.fetchzip { name = name'; inherit (spec) url sha256; }; fetch_git = name: spec: let ref = if spec ? ref then spec.ref else if spec ? branch then "refs/heads/${spec.branch}" else if spec ? tag then "refs/tags/${spec.tag}" else abort "In git source '${name}': Please specify `ref`, `tag` or `branch`!"; in builtins.fetchGit { url = spec.repo; inherit (spec) rev; inherit ref; }; fetch_local = spec: spec.path; fetch_builtin-tarball = name: throw ''[${name}] The niv type "builtin-tarball" is deprecated. You should instead use `builtin = true`. $ niv modify ${name} -a type=tarball -a builtin=true''; fetch_builtin-url = name: throw ''[${name}] The niv type "builtin-url" will soon be deprecated. You should instead use `builtin = true`. $ niv modify ${name} -a type=file -a builtin=true''; # # Various helpers # # https://github.com/NixOS/nixpkgs/pull/83241/files#diff-c6f540a4f3bfa4b0e8b6bafd4cd54e8bR695 sanitizeName = name: ( concatMapStrings (s: if builtins.isList s then "-" else s) ( builtins.split "[^[:alnum:]+._?=-]+" ((x: builtins.elemAt (builtins.match "\\.*(.*)" x) 0) name) ) ); # The set of packages used when specs are fetched using non-builtins. mkPkgs = sources: system: let sourcesNixpkgs = import (builtins_fetchTarball { inherit (sources.nixpkgs) url sha256; }) { inherit system; }; hasNixpkgsPath = builtins.any (x: x.prefix == "nixpkgs") builtins.nixPath; hasThisAsNixpkgsPath = == ./.; in if builtins.hasAttr "nixpkgs" sources then sourcesNixpkgs else if hasNixpkgsPath && ! hasThisAsNixpkgsPath then import {} else abort '' Please specify either (through -I or NIX_PATH=nixpkgs=...) or add a package called "nixpkgs" to your sources.json. ''; # The actual fetching function. fetch = pkgs: name: spec: if ! builtins.hasAttr "type" spec then abort "ERROR: niv spec ${name} does not have a 'type' attribute" else if spec.type == "file" then fetch_file pkgs name spec else if spec.type == "tarball" then fetch_tarball pkgs name spec else if spec.type == "git" then fetch_git name spec else if spec.type == "local" then fetch_local spec else if spec.type == "builtin-tarball" then fetch_builtin-tarball name else if spec.type == "builtin-url" then fetch_builtin-url name else abort "ERROR: niv spec ${name} has unknown type ${builtins.toJSON spec.type}"; # If the environment variable NIV_OVERRIDE_${name} is set, then use # the path directly as opposed to the fetched source. replace = name: drv: let saneName = stringAsChars (c: if isNull (builtins.match "[a-zA-Z0-9]" c) then "_" else c) name; ersatz = builtins.getEnv "NIV_OVERRIDE_${saneName}"; in if ersatz == "" then drv else # this turns the string into an actual Nix path (for both absolute and # relative paths) if builtins.substring 0 1 ersatz == "/" then /. + ersatz else /. + builtins.getEnv "PWD" + "/${ersatz}"; # Ports of functions for older nix versions # a Nix version of mapAttrs if the built-in doesn't exist mapAttrs = builtins.mapAttrs or ( f: set: with builtins; listToAttrs (map (attr: { name = attr; value = f attr set.${attr}; }) (attrNames set)) ); # https://github.com/NixOS/nixpkgs/blob/0258808f5744ca980b9a1f24fe0b1e6f0fecee9c/lib/lists.nix#L295 range = first: last: if first > last then [] else builtins.genList (n: first + n) (last - first + 1); # https://github.com/NixOS/nixpkgs/blob/0258808f5744ca980b9a1f24fe0b1e6f0fecee9c/lib/strings.nix#L257 stringToCharacters = s: map (p: builtins.substring p 1 s) (range 0 (builtins.stringLength s - 1)); # https://github.com/NixOS/nixpkgs/blob/0258808f5744ca980b9a1f24fe0b1e6f0fecee9c/lib/strings.nix#L269 stringAsChars = f: s: concatStrings (map f (stringToCharacters s)); concatMapStrings = f: list: concatStrings (map f list); concatStrings = builtins.concatStringsSep ""; # https://github.com/NixOS/nixpkgs/blob/8a9f58a375c401b96da862d969f66429def1d118/lib/attrsets.nix#L331 optionalAttrs = cond: as: if cond then as else {}; # fetchTarball version that is compatible between all the versions of Nix builtins_fetchTarball = { url, name ? null, sha256 }@attrs: let inherit (builtins) lessThan nixVersion fetchTarball; in if lessThan nixVersion "1.12" then fetchTarball ({ inherit url; } // (optionalAttrs (!isNull name) { inherit name; })) else fetchTarball attrs; # fetchurl version that is compatible between all the versions of Nix builtins_fetchurl = { url, name ? null, sha256 }@attrs: let inherit (builtins) lessThan nixVersion fetchurl; in if lessThan nixVersion "1.12" then fetchurl ({ inherit url; } // (optionalAttrs (!isNull name) { inherit name; })) else fetchurl attrs; # Create the final "sources" from the config mkSources = config: mapAttrs ( name: spec: if builtins.hasAttr "outPath" spec then abort "The values in sources.json should not have an 'outPath' attribute" else spec // { outPath = replace name (fetch config.pkgs name spec); } ) config.sources; # The "config" used by the fetchers mkConfig = { sourcesFile ? if builtins.pathExists ./sources.json then ./sources.json else null , sources ? if isNull sourcesFile then {} else builtins.fromJSON (builtins.readFile sourcesFile) , system ? builtins.currentSystem , pkgs ? mkPkgs sources system }: rec { # The sources, i.e. the attribute set of spec name to spec inherit sources; # The "pkgs" (evaluated nixpkgs) to use for e.g. non-builtin fetchers inherit pkgs; }; in mkSources (mkConfig {}) // { __functor = _: settings: mkSources (mkConfig settings); } ```

One theory I have is that flatbuffers is packaged with version numbers using only 2 decimal numbers - e.g. 1.12, rather than the more common 1.12.0 seen in other python packages. Tensorflow, specifies the dependency with 3 parts. I tried to patch the tensorflow setup.py file to change this, but I don't think it's possible to patch a wheel file?

lunik1 commented 3 years ago

EDIT: Don't do this, use @bbenne10's much better solution below.

The culprit here is in fact flatbuffers, not tensorflow. For some reason flatbuffers' version is being set to a timestamp rather than 1.12. I haven't figured out why or how to fix it, however we can patch tensorflow's wheel file so it will accept any version of flatbuffers. In my overridex.nix I have

  tensorflow-cpu = super.tensorflow-cpu.overridePythonAttrs (old: {
    nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ self.wheel ];
    postPatch = ''
      wheel unpack dist/tensorflow_cpu-2.5.0-cp38-cp38-manylinux2010_x86_64.whl
      rm dist/tensorflow_cpu-2.5.0-cp38-cp38-manylinux2010_x86_64.whl

      substituteInPlace tensorflow_cpu-2.5.0/tensorflow_cpu-2.5.0.dist-info/METADATA --replace 'flatbuffers (~=1.12.0)' 'flatbuffers'

      wheel pack tensorflow_cpu-2.5.0
      rm -rf tensorflow_cpu-2.5.0
      mv tensorflow_cpu-2.5.0-cp38-cp38-manylinux2010_x86_64.whl dist
    '';
  });

to do this. That is for tensorflow-cpu but the same principle should work for regular tensorflow. You will just need to change the package name and wheel file location.

Looking at the log when installing tensorflow we see the issue I opened with:

Requirement already satisfied: flatbuffers in /nix/store/i35alzj7cqbw4rgbbjgq8d6vr5zznw82-python3.9-flatbuffers-1.12/lib/python3.9/site-packages (from tensorflow-cpu==2.5.0) (20210806151009)
lunik1 commented 3 years ago

A downside of this approach is that similar logic is required for any package that depends on flatbuffers. It would be nice to fix it on flatbuffers' side.

bbenne10 commented 2 years ago

I'm looking into this for tensorflow 2.6.2. Looks like maybe this is the culprit?

Overriding as follows seems to have worked for me:

overrides = pkgs.poetry2nix.overrides.withDefault (self: super: {
  flatbuffers = super.flatbuffers.overrideAttrs (old: {
    VERSION=old.version;
  });
});
lunik1 commented 2 years ago

Works for me too, would be great if this could be added to overrides.nix.