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nixonlab / stellarscope

Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing
MIT License
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Output final log likelihood #3

Closed mlbendall closed 1 month ago

mlbendall commented 2 years ago

The final log likelihood could be used to compare pooling modes. The lnL is reported for each EM, so once for each cell (individual), celltype (celltype) or all (pseudobulk). This could be easily implemented by returning the lnL with TelescopeLikelihood.em() and summing.

mgreenig commented 2 years ago

Now logging final log likelihood and suppressing iteration-level logging for celltype/pseudobulk modes