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nkmiller / protein_interactions

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Code used to generate dMaSIF_v1.pkl #1

Open sivakanishka91 opened 1 year ago

sivakanishka91 commented 1 year ago

Hi @nkmiller,

Thanks for creating the colab notebook for generating the surface feature. While going through the code, I saw that you are loading dMaSIF_v1.pkl for getting dMaSIF features. Is it possible to share the code snippet, or the logic as to how the pickle file was generated.

Thanks

nkmiller commented 1 year ago

Hi there! We used the following notebook:

https://colab.research.google.com/github/casperg92/MaSIF_colab/blob/main/dMaSIF_Colab_V1.ipynb#scrollTo=JrrqzlIZDJ6H

We used the site-wise scores the linked notebook uses to identify hotspot residues and plot the heat map.