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nkschaefer / sarge

Heuristic, parsimony-based ancestral recombination graph inference
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sarge not finding htslib #1

Open awohns opened 2 years ago

awohns commented 2 years ago

I've been trying to run vcf2sarge but sarge doesn't seem to be able to find htslib. I've installed htslib from here (and also tried downloading from github), installed it, added the path to the htslib directory to $LD_LIBRARY_PATH and $LIBRARY_PATH and run make clean and make HTSLIB=1. However, I continue to get the following error:

ERROR: HTSLib not installed on this system. Conversion of VCF to SARGE format requires that you have HTSLib installed and available in the LIBRARY_PATH and LD_LIBRARY_PATH environment variables. Then recompile SARGE with HTSLIB=1.

Thanks in advance

Rymbekova commented 2 years ago

hi! i am having the same problem with htslib. did you find a way to solve it? thanks