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nleng / AutoFoci

Automated foci counting software especially designed for high-throughput image analysis in low dose experiments.
https://www.nature.com/articles/s41598-018-35660-5
GNU General Public License v2.0
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Unable to find file directory #2

Open cliandouble08 opened 1 year ago

cliandouble08 commented 1 year ago

Hi,

For the "open result file" selection, the program was not able to access the file directory even though I entered the right directory. The error message was "No .csv files were found in the specified location." Is this some kind of bug or my setting's incorrect?

Thanks, Cameron

nleng commented 1 year ago

Hi,

Did you manage to create the result files in the first tab? That should create a subfolder 00result_tables in the image directory. In the second tab you then only have to insert the image directory. You can leave the result file directory empty. It will automatically search for the 00result_tables subfolder.

I just tested it on Linux Mint and it worked with the example image folder. It is probably best to test that before using own data.

However, I also tested on Windows 11 and it failed to create the result files due to one of the ImageJ methods failing. Therefore, I recommend to use linux (for example through VMWare if using Windows). I am not at the university anymore, so I have very limited time to invest in this project. So I will probably not solve the Win 11 issue.