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nlgndnmz / COMPAS

Comparative alternative splicing detection
GNU General Public License v2.0
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install COMPAS #1

Open mangchen922 opened 3 years ago

mangchen922 commented 3 years ago

Hi,

I read a paper about COMPAS in detecting alternative splicing with SRRM4 activation. Then I am trying to use this package to analysis my data. But I was having trouble to install it. Here is my code.

library(devtools) install_github("nlgndnmz/COMPAS")

The error showed 404. Please indicate how to install the package. Thank you.

Best, Chen

nlgndnmz commented 3 years ago

Hi @mangchen922, the R package itself is not at the top folder of the repository. You can try changing your code to:

install_github("nlgndnmz/COMPAS", subdir="compas")

If that doesn't work, please try the recommended method as described in the README ( https://github.com/nlgndnmz/COMPAS#installation):

install.packages("/<path_to_folder>/compas", repos=NULL, type="source")

where <path_to_folder> above is the directory where you have cloned the repo. Note that cloning the repo will also make sure you have the helper scripts needed to use COMPAS.

mangchen922 commented 3 years ago

It works! Thank you so much.

Best, Chen