Closed mattfidler closed 2 years ago
> library(nlmixr2est) library(testthat) tmdd<-function() { ini({ tcl<-fix(log(0.0106)) tv1<-fix(log(3.09)) tq<-fix(log(0.0126)) tv2<-fix(log(1.65)) tkon<-log(0.114) tkoff<-log(56.7) tr0<-log(18) tkout<-log(0.034) tkint<-log(0.0051) tv4<-log(10) eta.cl+eta.v1~fix(c( 0.034, 0.0197,0.024 )) eta.v2~fix(0.025) eta.r0~2 eta.v4~0.3 eta.koff~0.3 prop.eps.mab <- 0.05 prop.eps.comp<-0.1 add.eps.mab<-5 add.eps.comp<-100 }) model({ CL<-exp(tcl+eta.cl) V1<-exp(tv1+eta.v1) V2<-exp(tv2+eta.v2) V4<-exp(tv4+eta.v4) Q<-exp(tq) KON<-exp(tkon) KOFF<-exp(tkoff+eta.koff) R0<-exp(tr0+eta.r0) KOUT<-exp(tkout) KIN<-R0*KOUT KINT<-exp(tkint) c<-A1/V1 complex=A4/V4; A3(0)<-18.83*3.085 A4(0)<-0 rel=A3/18.83/V1 d/dt(A1)<- -CL/V1*A1-Q/V1*A1+Q/V2*A2-KON/V1*A1*A3+KOFF*A4+KINT*A4 d/dt(A2)<- Q/V1*A1-Q/V2*A2 d/dt(A3)<- KIN*V1-KOUT*A3-KON*A1/V1*A3+KOFF*A4 d/dt(A4)<-KON*A1/V1*A3-KOFF*A4-KINT*A4 c~prop(prop.eps.mab)+add(add.eps.mab)|A1 complex~prop(prop.eps.comp)+add(add.eps.comp)|A4 }) } f <- nlmixr(tmdd) expect_equal(f$saemParHistNames, c("tkon", "tkoff", "tr0", "tkout", "tkint", "tv4", "V(eta.cl)", "V(eta.v1)", "V(eta.v2)", "V(eta.koff)", "V(eta.r0)", "V(eta.v4)", "add.eps.mab", "prop.eps.mab", "add.eps.comp", "prop.eps.comp")) > > > . + > > > > + . + > Error: f$saemParHistNames (`actual`) not equal to c(...) (`expected`). actual | expected [4] "tkout" | "tkout" [4] [5] "tkint" | "tkint" [5] [6] "tv4" | "tv4" [6] - "V(eta.cl)" [7] - "V(eta.v1)" [8] - "V(eta.v2)" [9] [7] "V(eta.koff)" | "V(eta.koff)" [10] [8] "V(eta.r0)" | "V(eta.r0)" [11] [9] "V(eta.v4)" | "V(eta.v4)" [12] >
This is correct.